Variant report

Variant	rs12292366
Chromosome Location	chr11:34019830-34019831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34018694..34020673-chr11:34026178..34028156,2	K562	blood:
2	chr11:34016657..34020888-chr11:34127780..34130463,3	K562	blood:
3	chr11:34017204..34020055-chr11:34021200..34023906,3	K562	blood:
4	chr11:34017302..34020894-chr11:34072155..34075321,5	MCF-7	breast:
5	chr11:34018085..34021579-chr11:34051099..34053696,3	K562	blood:
6	chr11:34018287..34020760-chr11:34051667..34053419,2	K562	blood:
7	chr11:34018779..34021162-chr11:34095181..34097010,2	K562	blood:
8	chr11:34017694..34021670-chr11:34071468..34075941,12	MCF-7	breast:
9	chr11:34018480..34020975-chr11:34073812..34076765,2	K562	blood:
10	chr11:34017787..34020470-chr11:34083587..34085765,2	K562	blood:
11	chr11:34019454..34022952-chr11:34071360..34074905,4	K562	blood:
12	chr11:33998966..34000482-chr11:34017921..34020175,2	MCF-7	breast:
13	chr11:34017295..34020752-chr11:34087860..34091315,4	K562	blood:
14	chr11:34006320..34008522-chr11:34018561..34020170,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082562	0.99[ASN][1000 genomes]
rs10768043	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10836144	0.90[ASN][1000 genomes]
rs10836145	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10836146	0.87[ASN][1000 genomes]
rs10836147	0.88[ASN][1000 genomes]
rs11032474	0.82[CHB][hapmap]
rs11032481	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11032482	0.90[ASN][1000 genomes]
rs11032485	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11032487	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12272003	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12277616	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12282240	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12285326	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418479	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs12421153	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12421249	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12576882	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12577490	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs12787303	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12789531	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12795523	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12799109	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1518918	0.83[CEU][hapmap]
rs2139177	0.88[ASN][1000 genomes]
rs35836121	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4756093	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs7112270	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7120707	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs7121633	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7122747	0.88[ASN][1000 genomes]
rs7952389	0.86[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34016400-34020400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:34019000-34021200	Enhancers	Brain Substantia Nigra	brain
3	chr11:34019200-34020200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:34019400-34020000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:34019400-34020400	Enhancers	Placenta	Placenta
6	chr11:34019400-34020800	Weak transcription	Liver	Liver
7	chr11:34019600-34020800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:34019600-34020800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:34019600-34020800	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:34019600-34020800	Weak transcription	GM12878-XiMat	blood
11	chr11:34019600-34024000	Weak transcription	Fetal Intestine Small	intestine
12	chr11:34019600-34025400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:34019800-34021000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:34019800-34021000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:34019800-34023800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:34019800-34026000	Weak transcription	HepG2	liver

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