Variant report

Variant	rs12421153
Chromosome Location	chr11:34013772-34013773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34013418..34015422-chr11:34129714..34132635,2	K562	blood:
2	chr11:34012814..34016212-chr11:34072473..34075239,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10768043	0.91[CHB][hapmap]
rs10836141	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836145	0.83[AMR][1000 genomes]
rs11032474	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11032475	0.91[ASN][1000 genomes]
rs11032481	0.86[CHB][hapmap]
rs11032485	0.83[AMR][1000 genomes]
rs11032487	0.83[AMR][1000 genomes]
rs12272003	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12277616	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12282240	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285326	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12290109	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292366	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12418479	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12421249	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576882	0.83[AMR][1000 genomes]
rs12577490	0.87[CHB][hapmap]
rs12787303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12789531	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12795523	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12797090	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12799109	1.00[CEU][hapmap];0.87[CHB][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1518918	0.81[CEU][hapmap]
rs35836121	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4316483	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755356	0.91[ASN][1000 genomes]
rs4756093	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7112270	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120707	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7121633	0.83[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12421153	FJX1	cis	cerebellum	SCAN
rs12421153	C11orf41	cis	cerebellum	SCAN
rs12421153	FBXO3	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34006400-34018200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34013400-34018400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:34013400-34018800	Weak transcription	Dnd41	blood
4	chr11:34013600-34018400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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