Variant report

Variant	rs12421249
Chromosome Location	chr11:34010734-34010735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33877952..33881017-chr11:34009873..34013165,3	K562	blood:
2	chr11:34006736..34012057-chr11:34071931..34075352,5	K562	blood:
3	chr11:34005894..34011017-chr11:34129149..34133359,4	K562	blood:
4	chr11:33856097..33858302-chr11:34008907..34011375,2	MCF-7	breast:
5	chr11:33857237..33859734-chr11:34009621..34012332,2	K562	blood:
6	chr11:34008766..34011082-chr11:34071931..34074716,3	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10836141	0.96[ASN][1000 genomes]
rs10836145	0.83[AMR][1000 genomes]
rs11032474	0.90[ASN][1000 genomes]
rs11032475	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032485	0.83[AMR][1000 genomes]
rs11032487	0.83[AMR][1000 genomes]
rs12272003	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12277616	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12282240	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12285326	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12290109	0.87[ASN][1000 genomes]
rs12292366	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12418479	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12421153	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576882	0.83[AMR][1000 genomes]
rs12787303	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12789531	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12795523	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12797090	0.92[ASN][1000 genomes]
rs12799109	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35836121	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4316483	0.92[ASN][1000 genomes]
rs4755356	0.83[ASN][1000 genomes]
rs4756093	0.92[ASN][1000 genomes]
rs7112270	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7120707	0.89[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34006400-34018200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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