Variant report

Variant	rs12799109
Chromosome Location	chr11:34023946-34023947
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34022633..34024172-chr11:34031611..34033900,2	K562	blood:
2	chr11:34022711..34024246-chr11:34066496..34068004,2	MCF-7	breast:
3	chr11:34022409..34025980-chr11:34071309..34074224,5	MCF-7	breast:
4	chr11:34022810..34025510-chr11:34071927..34075511,3	MCF-7	breast:
5	chr11:34021383..34024152-chr11:34378866..34381004,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10082562	0.91[ASN][1000 genomes]
rs10768043	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs10836144	1.00[ASN][1000 genomes]
rs10836145	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10836146	0.97[ASN][1000 genomes]
rs10836147	0.99[ASN][1000 genomes]
rs11032481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11032482	1.00[ASN][1000 genomes]
rs11032485	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11032486	0.89[ASN][1000 genomes]
rs11032487	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11032489	0.88[ASN][1000 genomes]
rs12272003	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12277616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12282240	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12285326	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12292366	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418479	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs12421153	1.00[CEU][hapmap];0.87[CHB][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12421249	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12576882	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12577490	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs12787303	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12789531	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12795523	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1518918	0.81[CEU][hapmap]
rs2139177	0.99[ASN][1000 genomes]
rs35836121	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4756093	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs7112270	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7120707	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs7121633	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7122747	0.99[ASN][1000 genomes]
rs7952389	0.96[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34019600-34024000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:34019600-34025400	Weak transcription	Fetal Intestine Large	intestine
3	chr11:34019800-34026000	Weak transcription	HepG2	liver
4	chr11:34020400-34028000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:34023400-34024400	Enhancers	Placenta	Placenta
6	chr11:34023600-34024400	Enhancers	GM12878-XiMat	blood
7	chr11:34023800-34024400	Bivalent Enhancer	HSMMtube	muscle
8	chr11:34023800-34024600	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:34023800-34024800	Enhancers	Rectal Mucosa Donor 31	rectum

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