Variant report

Variant	rs12577490
Chromosome Location	chr11:34028765-34028766
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34027166..34029078-chr11:34066707..34068808,2	MCF-7	breast:
2	chr11:34028224..34029930-chr11:34073891..34075941,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082562	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10742311	0.81[EUR][1000 genomes]
rs10768043	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836144	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836145	1.00[ASN][1000 genomes]
rs10836146	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836147	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836149	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11032481	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032482	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032485	1.00[ASN][1000 genomes]
rs11032486	0.90[ASN][1000 genomes]
rs11032487	1.00[ASN][1000 genomes]
rs11032489	0.90[ASN][1000 genomes]
rs11032491	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs12272003	0.88[ASN][1000 genomes]
rs12277616	0.90[ASN][1000 genomes]
rs12285326	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs12292366	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs12418479	0.87[CHB][hapmap]
rs12421153	0.87[CHB][hapmap]
rs12576882	1.00[ASN][1000 genomes]
rs12787303	0.82[CHB][hapmap]
rs12789531	0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs12799109	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2139177	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852514	0.85[CEU][hapmap]
rs4756093	0.87[CHB][hapmap]
rs7120520	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7120707	0.87[CHB][hapmap]
rs7121633	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122747	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952389	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34025200-34029000	Enhancers	Duodenum Mucosa	Duodenum
2	chr11:34026600-34035000	Weak transcription	Fetal Intestine Large	intestine
3	chr11:34028000-34029600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:34028200-34029200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:34028400-34029000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:34028600-34028800	Bivalent Enhancer	HSMM	muscle
7	chr11:34028600-34029000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:34028600-34029000	Bivalent Enhancer	HSMMtube	muscle

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