Variant report

Variant	rs3852514
Chromosome Location	chr11:34058107-34058108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34056630..34058681-chr11:34124765..34127887,3	K562	blood:
2	chr11:34053961..34056331-chr11:34057255..34060788,3	MCF-7	breast:
3	chr11:34056630..34058681-chr11:34124765..34127543,2	K562	blood:
4	chr11:34044990..34046830-chr11:34057382..34059703,2	K562	blood:
5	chr11:34056324..34059940-chr11:34070260..34073637,4	K562	blood:
6	chr11:34044990..34047866-chr11:34056596..34058882,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10742311	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10768043	0.88[CEU][hapmap]
rs10768046	0.95[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10836146	0.81[EUR][1000 genomes]
rs10836147	0.80[EUR][1000 genomes]
rs10836148	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10836149	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10836152	1.00[ASN][1000 genomes]
rs10836156	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11032481	0.85[CEU][hapmap];0.95[MEX][hapmap];0.81[EUR][1000 genomes]
rs11032482	0.80[EUR][1000 genomes]
rs11032491	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11032498	0.97[ASN][1000 genomes]
rs11032499	0.97[ASN][1000 genomes]
rs11032500	0.98[ASN][1000 genomes]
rs11032502	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11032503	1.00[ASN][1000 genomes]
rs11032504	1.00[ASN][1000 genomes]
rs12272149	0.97[ASN][1000 genomes]
rs12272859	0.85[ASN][1000 genomes]
rs12275094	1.00[ASN][1000 genomes]
rs12278727	0.97[ASN][1000 genomes]
rs12279034	0.98[ASN][1000 genomes]
rs12281014	0.98[ASN][1000 genomes]
rs12289965	0.82[ASN][1000 genomes]
rs12290124	0.95[ASN][1000 genomes]
rs12291499	0.97[ASN][1000 genomes]
rs12417443	1.00[ASN][1000 genomes]
rs12418368	0.97[ASN][1000 genomes]
rs12421526	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12577490	0.85[CEU][hapmap]
rs12788758	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12789371	1.00[ASN][1000 genomes]
rs12803207	1.00[ASN][1000 genomes]
rs12803608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12808425	0.97[ASN][1000 genomes]
rs1518918	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2139177	0.80[EUR][1000 genomes]
rs2421458	1.00[ASN][1000 genomes]
rs2421569	0.98[ASN][1000 genomes]
rs3864880	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4348871	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4363563	0.95[ASN][1000 genomes]
rs4497383	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4756099	0.96[ASN][1000 genomes]
rs61880366	0.95[ASN][1000 genomes]
rs7120520	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7121633	0.89[CEU][hapmap];0.91[MEX][hapmap];0.81[EUR][1000 genomes]
rs7935684	1.00[ASN][1000 genomes]
rs7935695	1.00[ASN][1000 genomes]
rs7935809	1.00[ASN][1000 genomes]
rs7950733	0.95[ASN][1000 genomes]
rs9787970	0.84[ASN][1000 genomes]
rs9787972	0.82[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3852514	ELP4	cis	cerebellum	SCAN
rs3852514	C11orf41	cis	cerebellum	SCAN
rs3852514	WT1AS	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34055000-34059600	Enhancers	Placenta	Placenta
2	chr11:34055600-34059600	Enhancers	K562	blood
3	chr11:34056200-34066200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:34057800-34058800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:34057800-34058800	Enhancers	Liver	Liver
6	chr11:34057800-34058800	Enhancers	Fetal Intestine Small	intestine
7	chr11:34057800-34059400	Enhancers	Fetal Intestine Large	intestine
8	chr11:34058000-34058400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:34058000-34058800	Enhancers	HepG2	liver

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