Variant report

Variant	rs12803608
Chromosome Location	chr11:34066567-34066568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34065111..34067459-chr11:34125759..34128013,3	K562	blood:
2	chr11:34062269..34064332-chr11:34065079..34066639,2	K562	blood:
3	chr11:34060665..34063462-chr11:34065111..34067418,2	MCF-7	breast:
4	chr11:33877966..33880753-chr11:34065562..34068525,2	K562	blood:
5	chr11:34062832..34064765-chr11:34065139..34066703,2	K562	blood:
6	chr11:34065587..34067431-chr11:34358883..34361873,2	K562	blood:
7	chr11:34065604..34067969-chr11:34357100..34359913,2	MCF-7	breast:
8	chr11:34065099..34068521-chr11:34076882..34079001,3	MCF-7	breast:
9	chr11:34065038..34068237-chr11:34125405..34130012,6	K562	blood:
10	chr11:34046638..34048627-chr11:34065248..34067644,2	MCF-7	breast:
11	chr11:34022711..34024246-chr11:34066496..34068004,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254708	Chromatin interaction
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10742311	0.98[ASN][1000 genomes]
rs10768046	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10836148	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10836149	0.85[ASN][1000 genomes]
rs10836152	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10836156	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11032491	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11032498	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032499	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032500	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11032502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032503	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032504	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12272149	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12272859	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12275094	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12278727	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12279034	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12281014	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12289965	0.82[ASN][1000 genomes]
rs12290124	0.95[ASN][1000 genomes]
rs12291499	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12417443	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418368	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12421526	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12788758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs12789371	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803207	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12808425	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1518918	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2421458	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2421569	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3852514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3864880	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4348871	0.99[ASN][1000 genomes]
rs4363563	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4497383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4756099	0.96[ASN][1000 genomes]
rs61880366	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7120520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7935684	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7935695	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7935809	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7950733	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9787970	0.84[ASN][1000 genomes]
rs9787972	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34061200-34066600	Weak transcription	HUVEC	blood vessel
2	chr11:34065600-34067600	Enhancers	Placenta	Placenta
3	chr11:34066200-34066600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:34066200-34066600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:34066200-34066600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:34066200-34066600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:34066200-34066600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:34066200-34066600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:34066200-34066600	Enhancers	Fetal Thymus	thymus
10	chr11:34066200-34066600	Enhancers	NHEK	skin
11	chr11:34066200-34066600	Enhancers	Osteobl	bone
12	chr11:34066200-34066800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:34066200-34066800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:34066200-34066800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:34066200-34067000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:34066200-34067000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr11:34066200-34067000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:34066200-34067000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:34066200-34067000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:34066200-34067000	Enhancers	HSMM	muscle
21	chr11:34066200-34067200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:34066200-34067200	Enhancers	Primary hematopoietic stem cells	blood
23	chr11:34066200-34067200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr11:34066200-34067200	Enhancers	Stomach Mucosa	stomach
25	chr11:34066200-34067200	Enhancers	HMEC	breast
26	chr11:34066200-34067200	Enhancers	NHDF-Ad	bronchial
27	chr11:34066200-34067400	Flanking Active TSS	Hela-S3	cervix
28	chr11:34066200-34067800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:34066200-34067800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:34066400-34066600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr11:34066400-34066600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr11:34066400-34066600	Enhancers	HSMMtube	muscle
33	chr11:34066400-34066600	Enhancers	NH-A	brain
34	chr11:34066400-34066800	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr11:34066400-34066800	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr11:34066400-34066800	Active TSS	K562	blood
37	chr11:34066400-34067000	Enhancers	GM12878-XiMat	blood
38	chr11:34066400-34067200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:34066400-34067200	Flanking Active TSS	A549	lung
40	chr11:34066400-34067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr11:34066400-34067400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:34066400-34067400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr11:34066400-34067800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:34066400-34067800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:34066400-34072600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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