Variant report

Variant	rs4363563
Chromosome Location	chr11:34052485-34052486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34033395..34035564-chr11:34051656..34054428,2	K562	blood:
2	chr11:34051714..34053662-chr11:34071864..34074470,3	MCF-7	breast:
3	chr11:34052198..34054550-chr11:34073207..34075242,2	K562	blood:
4	chr11:34018287..34020760-chr11:34051667..34053419,2	K562	blood:
5	chr11:34018085..34021579-chr11:34051099..34053696,3	K562	blood:
6	chr11:34050521..34052924-chr11:34062931..34064772,2	K562	blood:
7	chr11:34049427..34054146-chr11:34058279..34060796,4	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10742311	0.97[ASN][1000 genomes]
rs10768046	0.86[ASN][1000 genomes]
rs10836148	0.89[ASN][1000 genomes]
rs10836149	0.89[ASN][1000 genomes]
rs10836152	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11032491	0.87[ASN][1000 genomes]
rs11032498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032500	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11032502	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032503	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032504	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12272149	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12272859	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12275094	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12278727	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12279034	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12281014	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12289965	0.86[ASN][1000 genomes]
rs12290124	0.91[ASN][1000 genomes]
rs12291499	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417443	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12418368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12788758	0.98[ASN][1000 genomes]
rs12789371	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12803207	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12803608	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12808425	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1518918	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2421458	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2421569	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3852514	0.95[ASN][1000 genomes]
rs3864880	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4348871	0.95[ASN][1000 genomes]
rs4497383	0.92[ASN][1000 genomes]
rs4756099	0.98[ASN][1000 genomes]
rs61880366	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7120520	0.97[ASN][1000 genomes]
rs7935684	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7935695	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7935809	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7950733	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787970	0.88[ASN][1000 genomes]
rs9787972	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34050000-34052600	Enhancers	NHEK	skin
2	chr11:34050400-34055800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:34050600-34057800	Weak transcription	Fetal Intestine Large	intestine
4	chr11:34051000-34052600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:34051000-34053000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:34051000-34053200	Enhancers	Placenta	Placenta
7	chr11:34051400-34053400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:34051600-34053000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:34052200-34055600	Weak transcription	HMEC	breast
10	chr11:34052400-34052600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell

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