Variant report

Variant	rs4497383
Chromosome Location	chr11:34067121-34067122
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34027166..34029078-chr11:34066707..34068808,2	MCF-7	breast:
2	chr11:34065111..34067459-chr11:34125759..34128013,3	K562	blood:
3	chr11:34060665..34063462-chr11:34065111..34067418,2	MCF-7	breast:
4	chr11:33877966..33880753-chr11:34065562..34068525,2	K562	blood:
5	chr11:34065587..34067431-chr11:34358883..34361873,2	K562	blood:
6	chr11:34065604..34067969-chr11:34357100..34359913,2	MCF-7	breast:
7	chr11:34065099..34068521-chr11:34076882..34079001,3	MCF-7	breast:
8	chr11:34065038..34068237-chr11:34125405..34130012,6	K562	blood:
9	chr11:34046638..34048627-chr11:34065248..34067644,2	MCF-7	breast:
10	chr11:34066730..34068874-chr11:34083193..34085430,2	MCF-7	breast:
11	chr11:34022711..34024246-chr11:34066496..34068004,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254708	Chromatin interaction
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10742311	0.95[ASN][1000 genomes]
rs10768046	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs10836148	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10836149	0.82[ASN][1000 genomes]
rs10836152	0.97[ASN][1000 genomes]
rs10836156	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs11032491	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11032498	0.94[ASN][1000 genomes]
rs11032499	0.94[ASN][1000 genomes]
rs11032500	0.95[ASN][1000 genomes]
rs11032502	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11032503	0.97[ASN][1000 genomes]
rs11032504	0.97[ASN][1000 genomes]
rs12272149	0.94[ASN][1000 genomes]
rs12272859	0.82[ASN][1000 genomes]
rs12275094	0.97[ASN][1000 genomes]
rs12278727	0.94[ASN][1000 genomes]
rs12279034	0.95[ASN][1000 genomes]
rs12281014	0.95[ASN][1000 genomes]
rs12290124	0.92[ASN][1000 genomes]
rs12291499	0.94[ASN][1000 genomes]
rs12417443	0.97[ASN][1000 genomes]
rs12418368	0.94[ASN][1000 genomes]
rs12421526	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12788758	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12789371	0.97[ASN][1000 genomes]
rs12803207	0.97[ASN][1000 genomes]
rs12803608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12808425	0.94[ASN][1000 genomes]
rs1518918	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2421458	0.97[ASN][1000 genomes]
rs2421569	0.95[ASN][1000 genomes]
rs3852514	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3864880	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4348871	0.96[ASN][1000 genomes]
rs4363563	0.92[ASN][1000 genomes]
rs4756099	0.93[ASN][1000 genomes]
rs61880366	0.92[ASN][1000 genomes]
rs7120520	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7935684	0.97[ASN][1000 genomes]
rs7935695	0.97[ASN][1000 genomes]
rs7935809	0.97[ASN][1000 genomes]
rs7950733	0.92[ASN][1000 genomes]
rs9787970	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4497383	FBXO3	cis	parietal	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34065600-34067600	Enhancers	Placenta	Placenta
2	chr11:34066200-34067200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34066200-34067200	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:34066200-34067200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr11:34066200-34067200	Enhancers	Stomach Mucosa	stomach
6	chr11:34066200-34067200	Enhancers	HMEC	breast
7	chr11:34066200-34067200	Enhancers	NHDF-Ad	bronchial
8	chr11:34066200-34067400	Flanking Active TSS	Hela-S3	cervix
9	chr11:34066200-34067800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:34066200-34067800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:34066400-34067200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:34066400-34067200	Flanking Active TSS	A549	lung
13	chr11:34066400-34067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr11:34066400-34067400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:34066400-34067400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:34066400-34067800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:34066400-34067800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:34066400-34072600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:34066600-34067200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr11:34066600-34067200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:34066600-34067200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:34066600-34067200	Flanking Active TSS	NH-A	brain
23	chr11:34066600-34067200	Flanking Active TSS	Osteobl	bone
24	chr11:34066600-34067400	Enhancers	HUVEC	blood vessel
25	chr11:34066600-34067400	Flanking Active TSS	NHEK	skin
26	chr11:34066800-34067200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr11:34066800-34067200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:34066800-34067200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:34066800-34067200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr11:34066800-34067200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:34066800-34067400	Flanking Active TSS	K562	blood
32	chr11:34066800-34072000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:34066800-34072200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:34067000-34067200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr11:34067000-34067200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:34067000-34067200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:34067000-34067200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:34067000-34067400	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr11:34067000-34067400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:34067000-34067600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr11:34067000-34067800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:34067000-34071400	Weak transcription	HSMM	muscle
43	chr11:34067000-34071600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:34067000-34071600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:34067000-34071600	Weak transcription	HSMMtube	muscle
46	chr11:34067000-34072000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:34067000-34072200	Weak transcription	GM12878-XiMat	blood
48	chr11:34067000-34072400	Weak transcription	H9 Cell Line	embryonic stem cell

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