Variant report

Variant	rs2421569
Chromosome Location	chr11:34055459-34055460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34055009..34057306-chr11:34063538..34065316,2	K562	blood:
2	chr11:34055302..34057651-chr11:34168672..34170697,2	K562	blood:
3	chr11:34052945..34055734-chr11:34073263..34075242,3	K562	blood:
4	chr11:34053961..34056331-chr11:34057255..34060788,3	MCF-7	breast:
5	chr11:34054096..34055825-chr11:34072849..34075469,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10742311	1.00[ASN][1000 genomes]
rs10768046	0.84[ASN][1000 genomes]
rs10836148	0.87[ASN][1000 genomes]
rs10836149	0.87[ASN][1000 genomes]
rs10836152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032491	0.84[ASN][1000 genomes]
rs11032498	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11032499	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11032500	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032502	0.98[ASN][1000 genomes]
rs11032503	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11032504	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12272149	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12272859	0.87[ASN][1000 genomes]
rs12275094	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12278727	0.98[ASN][1000 genomes]
rs12279034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281014	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12289965	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12290124	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12291499	0.98[ASN][1000 genomes]
rs12417443	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12418368	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12788758	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12789371	0.98[ASN][1000 genomes]
rs12803207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12803608	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12808425	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852514	0.98[ASN][1000 genomes]
rs3864880	0.98[ASN][1000 genomes]
rs4348871	0.98[ASN][1000 genomes]
rs4363563	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4497383	0.95[ASN][1000 genomes]
rs4756099	0.98[ASN][1000 genomes]
rs61880366	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7120520	1.00[ASN][1000 genomes]
rs7935684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7935695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7935809	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950733	0.97[ASN][1000 genomes]
rs9787970	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9787972	0.84[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34050400-34055800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34050600-34057800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:34052200-34055600	Weak transcription	HMEC	breast
4	chr11:34053200-34055600	Weak transcription	NHEK	skin
5	chr11:34055000-34059600	Enhancers	Placenta	Placenta

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