Variant report

Variant	rs12803207
Chromosome Location	chr11:34066398-34066399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34065111..34067459-chr11:34125759..34128013,3	K562	blood:
2	chr11:34062269..34064332-chr11:34065079..34066639,2	K562	blood:
3	chr11:34060665..34063462-chr11:34065111..34067418,2	MCF-7	breast:
4	chr11:33877966..33880753-chr11:34065562..34068525,2	K562	blood:
5	chr11:34062832..34064765-chr11:34065139..34066703,2	K562	blood:
6	chr11:34065587..34067431-chr11:34358883..34361873,2	K562	blood:
7	chr11:34065604..34067969-chr11:34357100..34359913,2	MCF-7	breast:
8	chr11:34065099..34068521-chr11:34076882..34079001,3	MCF-7	breast:
9	chr11:34065038..34068237-chr11:34125405..34130012,6	K562	blood:
10	chr11:34046638..34048627-chr11:34065248..34067644,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254708	Chromatin interaction
ENSG00000135387	Chromatin interaction
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10742311	0.98[ASN][1000 genomes]
rs10768046	0.82[ASN][1000 genomes]
rs10836148	0.85[ASN][1000 genomes]
rs10836149	0.85[ASN][1000 genomes]
rs10836152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032491	0.83[ASN][1000 genomes]
rs11032498	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11032499	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11032500	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032502	1.00[ASN][1000 genomes]
rs11032503	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032504	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272149	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12272859	0.85[ASN][1000 genomes]
rs12275094	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278727	0.97[ASN][1000 genomes]
rs12279034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281014	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12289965	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12290124	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12291499	0.97[ASN][1000 genomes]
rs12417443	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12418368	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12788758	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12789371	1.00[ASN][1000 genomes]
rs12803608	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12808425	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1518918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852514	1.00[ASN][1000 genomes]
rs3864880	0.99[ASN][1000 genomes]
rs4348871	0.99[ASN][1000 genomes]
rs4363563	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4497383	0.97[ASN][1000 genomes]
rs4756099	0.96[ASN][1000 genomes]
rs61880366	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7120520	0.98[ASN][1000 genomes]
rs7935684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935809	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950733	0.95[ASN][1000 genomes]
rs9787970	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9787972	0.82[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34061200-34066600	Weak transcription	HUVEC	blood vessel
2	chr11:34065600-34067600	Enhancers	Placenta	Placenta
3	chr11:34066000-34066400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:34066200-34066400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:34066200-34066400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:34066200-34066400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:34066200-34066400	Enhancers	A549	lung
8	chr11:34066200-34066400	Flanking Active TSS	K562	blood
9	chr11:34066200-34066400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:34066200-34066600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:34066200-34066600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:34066200-34066600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:34066200-34066600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:34066200-34066600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:34066200-34066600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:34066200-34066600	Enhancers	Fetal Thymus	thymus
17	chr11:34066200-34066600	Enhancers	NHEK	skin
18	chr11:34066200-34066600	Enhancers	Osteobl	bone
19	chr11:34066200-34066800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:34066200-34066800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:34066200-34066800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:34066200-34067000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:34066200-34067000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr11:34066200-34067000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:34066200-34067000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:34066200-34067000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:34066200-34067000	Enhancers	HSMM	muscle
28	chr11:34066200-34067200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:34066200-34067200	Enhancers	Primary hematopoietic stem cells	blood
30	chr11:34066200-34067200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr11:34066200-34067200	Enhancers	Stomach Mucosa	stomach
32	chr11:34066200-34067200	Enhancers	HMEC	breast
33	chr11:34066200-34067200	Enhancers	NHDF-Ad	bronchial
34	chr11:34066200-34067400	Flanking Active TSS	Hela-S3	cervix
35	chr11:34066200-34067800	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr11:34066200-34067800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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