Variant report

Variant	rs10768046
Chromosome Location	chr11:34033151-34033152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34022633..34024172-chr11:34031611..34033900,2	K562	blood:
2	chr11:34029956..34035803-chr11:34072103..34076494,6	K562	blood:
3	chr11:34025362..34027796-chr11:34030458..34033196,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10742311	0.84[ASN][1000 genomes]
rs10836148	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836149	0.97[ASN][1000 genomes]
rs10836152	0.82[ASN][1000 genomes]
rs10836156	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs11032491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11032498	0.85[ASN][1000 genomes]
rs11032499	0.85[ASN][1000 genomes]
rs11032500	0.84[ASN][1000 genomes]
rs11032502	0.95[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11032503	0.82[ASN][1000 genomes]
rs11032504	0.82[ASN][1000 genomes]
rs12272149	0.85[ASN][1000 genomes]
rs12272859	0.97[ASN][1000 genomes]
rs12275094	0.82[ASN][1000 genomes]
rs12278727	0.85[ASN][1000 genomes]
rs12279034	0.84[ASN][1000 genomes]
rs12281014	0.83[ASN][1000 genomes]
rs12289965	0.95[ASN][1000 genomes]
rs12291499	0.85[ASN][1000 genomes]
rs12417443	0.82[ASN][1000 genomes]
rs12418368	0.85[ASN][1000 genomes]
rs12421526	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12788758	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12789371	0.82[ASN][1000 genomes]
rs12803207	0.82[ASN][1000 genomes]
rs12803608	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12808425	0.85[ASN][1000 genomes]
rs1518918	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2421458	0.82[ASN][1000 genomes]
rs2421569	0.84[ASN][1000 genomes]
rs3852514	0.95[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3864880	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4348871	0.82[ASN][1000 genomes]
rs4363563	0.86[ASN][1000 genomes]
rs4497383	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs4756099	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61880366	0.84[ASN][1000 genomes]
rs7120520	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7121633	0.81[GIH][hapmap]
rs7935684	0.82[ASN][1000 genomes]
rs7935695	0.82[ASN][1000 genomes]
rs7935809	0.82[ASN][1000 genomes]
rs7950733	0.87[ASN][1000 genomes]
rs9787970	0.97[ASN][1000 genomes]
rs9787972	0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10768046	ELP4	cis	cerebellum	SCAN
rs10768046	NAT10	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34026600-34035000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:34029000-34036000	Weak transcription	Duodenum Mucosa	Duodenum

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