Variant report

Variant	rs12808425
Chromosome Location	chr11:34049696-34049697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34047888..34049807-chr11:34058557..34060291,2	K562	blood:
2	chr11:34040788..34042322-chr11:34047509..34050356,2	K562	blood:
3	chr11:34048725..34050280-chr11:34056385..34058046,2	MCF-7	breast:
4	chr11:34049427..34054146-chr11:34058279..34060796,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10742311	0.98[ASN][1000 genomes]
rs10768046	0.85[ASN][1000 genomes]
rs10836148	0.88[ASN][1000 genomes]
rs10836149	0.88[ASN][1000 genomes]
rs10836152	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032491	0.86[ASN][1000 genomes]
rs11032498	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032499	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032500	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032502	0.97[ASN][1000 genomes]
rs11032503	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11032504	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12272149	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272859	0.88[ASN][1000 genomes]
rs12275094	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278727	1.00[ASN][1000 genomes]
rs12279034	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281014	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12289965	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12290124	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12291499	1.00[ASN][1000 genomes]
rs12417443	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12418368	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12788758	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789371	0.97[ASN][1000 genomes]
rs12803207	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12803608	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1518918	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2421458	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2421569	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852514	0.97[ASN][1000 genomes]
rs3864880	0.96[ASN][1000 genomes]
rs4348871	0.96[ASN][1000 genomes]
rs4363563	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4497383	0.94[ASN][1000 genomes]
rs4756099	0.99[ASN][1000 genomes]
rs61880366	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7120520	0.98[ASN][1000 genomes]
rs7935684	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935695	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935809	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7950733	0.98[ASN][1000 genomes]
rs9787970	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9787972	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3399258	chr11:34046901-34049749	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3438684	chr11:34047026-34049824	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34048800-34050200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34048800-34050400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:34048800-34050400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:34048800-34050400	Enhancers	Pancreas	Pancrea
5	chr11:34048800-34050600	Enhancers	Fetal Intestine Small	intestine
6	chr11:34048800-34052400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:34049000-34049800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:34049000-34049800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:34049000-34050200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:34049000-34050200	Enhancers	Colonic Mucosa	Colon
11	chr11:34049000-34050600	Enhancers	Fetal Intestine Large	intestine
12	chr11:34049000-34050600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:34049200-34049800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:34049200-34049800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:34049200-34049800	Flanking Active TSS	HepG2	liver
16	chr11:34049200-34050200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:34049200-34050200	Flanking Active TSS	Liver	Liver
18	chr11:34049200-34050600	Enhancers	Placenta	Placenta
19	chr11:34049200-34051600	Enhancers	Stomach Mucosa	stomach
20	chr11:34049400-34049800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:34049400-34050200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:34049400-34050200	Enhancers	Fetal Kidney	kidney
23	chr11:34049400-34050200	Enhancers	Psoas Muscle	Psoas
24	chr11:34049400-34050200	Enhancers	Small Intestine	intestine
25	chr11:34049400-34050200	Flanking Active TSS	A549	lung
26	chr11:34049400-34050400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:34049400-34052400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:34049600-34049800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:34049600-34050000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:34049600-34050000	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr11:34049600-34050200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:34049600-34050400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:34049600-34050400	Enhancers	Right Ventricle	heart
34	chr11:34049600-34050400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:34049600-34050800	Weak transcription	Aorta	Aorta
36	chr11:34049600-34051200	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links