Variant report

Variant	rs12289965
Chromosome Location	chr11:34037608-34037609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34035462..34037651-chr11:34072261..34075519,3	MCF-7	breast:
2	chr11:34035968..34037772-chr11:34038826..34040727,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10742311	0.84[ASN][1000 genomes]
rs10768046	0.95[ASN][1000 genomes]
rs10836148	0.97[ASN][1000 genomes]
rs10836149	0.97[ASN][1000 genomes]
rs10836152	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11032491	0.96[ASN][1000 genomes]
rs11032498	0.85[ASN][1000 genomes]
rs11032499	0.85[ASN][1000 genomes]
rs11032500	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11032502	0.82[ASN][1000 genomes]
rs11032503	0.82[ASN][1000 genomes]
rs11032504	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12272149	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12272859	0.97[ASN][1000 genomes]
rs12275094	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12278727	0.85[ASN][1000 genomes]
rs12279034	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12281014	0.83[ASN][1000 genomes]
rs12290109	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12290124	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12291499	0.85[ASN][1000 genomes]
rs12417443	0.82[ASN][1000 genomes]
rs12418368	0.85[ASN][1000 genomes]
rs12788758	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12789371	0.82[ASN][1000 genomes]
rs12803207	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12803608	0.82[ASN][1000 genomes]
rs12808425	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1518918	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2421458	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2421569	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3852514	0.82[ASN][1000 genomes]
rs3864880	0.82[ASN][1000 genomes]
rs4348871	0.82[ASN][1000 genomes]
rs4363563	0.86[ASN][1000 genomes]
rs4756099	0.84[ASN][1000 genomes]
rs61880366	0.84[ASN][1000 genomes]
rs7120520	0.84[ASN][1000 genomes]
rs7935684	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7935695	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7935809	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7950733	0.87[ASN][1000 genomes]
rs9787970	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787972	0.97[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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