Variant report

Variant	rs1518918
Chromosome Location	chr11:34065277-34065278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34065111..34067459-chr11:34125759..34128013,3	K562	blood:
2	chr11:34062269..34064332-chr11:34065079..34066639,2	K562	blood:
3	chr11:34060665..34063462-chr11:34065111..34067418,2	MCF-7	breast:
4	chr11:34062832..34064765-chr11:34065139..34066703,2	K562	blood:
5	chr11:34065099..34068521-chr11:34076882..34079001,3	MCF-7	breast:
6	chr11:34055009..34057306-chr11:34063538..34065316,2	K562	blood:
7	chr11:34065038..34068237-chr11:34125405..34130012,6	K562	blood:
8	chr11:34046638..34048627-chr11:34065248..34067644,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10742311	0.98[ASN][1000 genomes]
rs10768046	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10836148	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10836149	0.85[ASN][1000 genomes]
rs10836152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836156	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs11032474	0.86[MEX][hapmap]
rs11032491	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11032498	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11032499	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11032500	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032502	0.85[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11032503	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032504	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272149	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12272859	0.85[ASN][1000 genomes]
rs12275094	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278727	0.97[ASN][1000 genomes]
rs12279034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281014	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12289965	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12290124	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12291499	0.97[ASN][1000 genomes]
rs12292366	0.83[CEU][hapmap]
rs12417443	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12418368	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12418479	0.88[CEU][hapmap];0.86[MEX][hapmap]
rs12421153	0.81[CEU][hapmap]
rs12421526	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12787303	0.81[CEU][hapmap]
rs12788758	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12789371	1.00[ASN][1000 genomes]
rs12799109	0.81[CEU][hapmap]
rs12803207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12808425	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2421458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852514	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3864880	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4348871	0.99[ASN][1000 genomes]
rs4363563	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4497383	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4756093	0.88[CEU][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs4756099	0.96[ASN][1000 genomes]
rs61880366	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7120520	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7120707	0.92[CEU][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs7935684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935809	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950733	0.95[ASN][1000 genomes]
rs9787970	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9787972	0.82[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1518918	LDLRAD3	cis	cerebellum	SCAN
rs1518918	WT1AS	cis	parietal	SCAN
rs1518918	FBXO3	cis	cerebellum	SCAN
rs1518918	C11orf41	cis	cerebellum	SCAN
rs1518918	SLC1A2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34056200-34066200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34061200-34066600	Weak transcription	HUVEC	blood vessel
3	chr11:34063600-34065600	Weak transcription	Placenta	Placenta
4	chr11:34064800-34065600	Weak transcription	K562	blood

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