Variant report

Variant	rs12290109
Chromosome Location	chr11:34018159-34018160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34016657..34020888-chr11:34127780..34130463,3	K562	blood:
2	chr11:34017204..34020055-chr11:34021200..34023906,3	K562	blood:
3	chr11:34017302..34020894-chr11:34072155..34075321,5	MCF-7	breast:
4	chr11:34017030..34019308-chr11:34075054..34077905,2	K562	blood:
5	chr11:34018085..34021579-chr11:34051099..34053696,3	K562	blood:
6	chr11:34017694..34021670-chr11:34071468..34075941,12	MCF-7	breast:
7	chr11:34016768..34019238-chr11:34070653..34073628,2	K562	blood:
8	chr11:34017787..34020470-chr11:34083587..34085765,2	K562	blood:
9	chr11:33998966..34000482-chr11:34017921..34020175,2	MCF-7	breast:
10	chr11:34017295..34020752-chr11:34087860..34091315,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10836141	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11032474	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11032475	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12272149	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12282240	0.94[ASN][1000 genomes]
rs12289965	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12418479	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12421153	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12421249	0.87[ASN][1000 genomes]
rs12787303	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12788758	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12795523	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12797090	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35836121	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4316483	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755356	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756093	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7112270	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7120707	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10363	chr11:34015216-34018311	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34006400-34018200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34013400-34018400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:34013400-34018800	Weak transcription	Dnd41	blood
4	chr11:34013600-34018400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:34016400-34018800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:34016400-34020400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:34016800-34018400	Weak transcription	K562	blood
8	chr11:34017800-34018400	Enhancers	Fetal Intestine Small	intestine
9	chr11:34017800-34019600	Enhancers	Fetal Intestine Large	intestine
10	chr11:34018000-34018200	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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