Variant report

Variant	rs35836121
Chromosome Location	chr5:16718420-16718421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:16718186-16718485	A549	lung:	n/a	n/a
2	TEAD4	chr5:16718229-16718590	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr5:16718181-16718484	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
MYO10	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10836141	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836145	0.83[AMR][1000 genomes]
rs11032474	0.83[ASN][1000 genomes]
rs11032475	0.91[ASN][1000 genomes]
rs11032485	0.83[AMR][1000 genomes]
rs11032487	0.83[AMR][1000 genomes]
rs12272003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12277616	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12282240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285326	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12290109	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292366	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12418479	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12421153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421249	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576882	0.83[AMR][1000 genomes]
rs12787303	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12789531	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12795523	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12797090	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12799109	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4316483	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755356	0.91[ASN][1000 genomes]
rs4756093	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7112270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120707	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16682400-16736000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:16710400-16723600	Weak transcription	Esophagus	oesophagus
3	chr5:16711200-16719000	Weak transcription	Lung	lung
4	chr5:16711200-16719400	Weak transcription	Pancreas	Pancrea
5	chr5:16711200-16723800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:16711200-16736400	Weak transcription	Hela-S3	cervix
7	chr5:16711400-16719400	Weak transcription	Gastric	stomach
8	chr5:16711400-16721000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:16711400-16721200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:16711400-16721600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:16711400-16724000	Weak transcription	Ovary	ovary
12	chr5:16711400-16727800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:16711400-16728200	Weak transcription	Spleen	Spleen
14	chr5:16711400-16730200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:16711400-16731800	Weak transcription	HMEC	breast
16	chr5:16711600-16721600	Weak transcription	NHEK	skin
17	chr5:16711600-16721800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:16711600-16736000	Weak transcription	Placenta	Placenta
19	chr5:16713600-16721600	Weak transcription	Stomach Mucosa	stomach
20	chr5:16713800-16719200	Weak transcription	HepG2	liver
21	chr5:16713800-16731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:16713800-16735600	Weak transcription	Colonic Mucosa	Colon
23	chr5:16714000-16719800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr5:16714000-16721400	Weak transcription	HSMMtube	muscle
25	chr5:16714000-16721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:16714000-16724000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr5:16714000-16726200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:16714000-16726200	Weak transcription	Left Ventricle	heart
29	chr5:16714000-16730200	Weak transcription	Osteobl	bone
30	chr5:16714200-16721400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:16714200-16721600	Weak transcription	Fetal Lung	lung
32	chr5:16714200-16721600	Weak transcription	A549	lung
33	chr5:16714200-16721600	Weak transcription	HSMM	muscle
34	chr5:16714200-16726200	Weak transcription	Fetal Kidney	kidney
35	chr5:16714200-16730400	Weak transcription	NHLF	lung
36	chr5:16714200-16736000	Weak transcription	NHDF-Ad	bronchial
37	chr5:16714400-16720200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr5:16714400-16721200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr5:16714400-16730000	Weak transcription	NH-A	brain
40	chr5:16714600-16719400	Weak transcription	Brain Anterior Caudate	brain
41	chr5:16714600-16720200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:16714600-16721600	Weak transcription	Brain Angular Gyrus	brain
43	chr5:16714600-16722000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr5:16714600-16726400	Weak transcription	Brain Substantia Nigra	brain
45	chr5:16714600-16728200	Weak transcription	Psoas Muscle	Psoas
46	chr5:16714800-16720200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr5:16714800-16721600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr5:16714800-16721600	Weak transcription	Fetal Muscle Leg	muscle
49	chr5:16714800-16721800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:16715000-16719000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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