Variant report

Variant	rs12789531
Chromosome Location	chr11:34022294-34022295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34017204..34020055-chr11:34021200..34023906,3	K562	blood:
2	chr11:34020188..34022737-chr11:34029485..34031356,2	K562	blood:
3	chr11:34021452..34023034-chr11:34071806..34073650,2	K562	blood:
4	chr11:34019454..34022952-chr11:34071360..34074905,4	K562	blood:
5	chr11:34021383..34024152-chr11:34378866..34381004,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10082562	1.00[ASN][1000 genomes]
rs10768043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10836144	0.91[ASN][1000 genomes]
rs10836145	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10836146	0.89[ASN][1000 genomes]
rs10836147	0.90[ASN][1000 genomes]
rs11032474	0.90[GIH][hapmap]
rs11032481	0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs11032482	0.91[ASN][1000 genomes]
rs11032485	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11032486	0.81[ASN][1000 genomes]
rs11032487	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11032489	0.80[ASN][1000 genomes]
rs12272003	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12277616	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282240	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12285326	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12292366	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418479	0.80[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap]
rs12421153	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12421249	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12576882	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12577490	0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs12787303	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12795523	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12799109	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2139177	0.90[ASN][1000 genomes]
rs35836121	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4756093	0.80[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap]
rs7112270	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7120707	0.91[CHB][hapmap];0.90[GIH][hapmap]
rs7121633	0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7122747	0.90[ASN][1000 genomes]
rs7952389	0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12789531	FBXO3	cis	cerebellum	SCAN
rs12789531	C11orf41	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34019600-34024000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:34019600-34025400	Weak transcription	Fetal Intestine Large	intestine
3	chr11:34019800-34023800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:34019800-34026000	Weak transcription	HepG2	liver
5	chr11:34020400-34023400	Weak transcription	Placenta	Placenta
6	chr11:34020400-34028000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:34021200-34022800	Enhancers	GM12878-XiMat	blood

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