Variant report

Variant	rs12576882
Chromosome Location	chr11:34026474-34026475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34018694..34020673-chr11:34026178..34028156,2	K562	blood:
2	chr11:34025362..34027796-chr11:34030458..34033196,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10082562	0.90[ASN][1000 genomes]
rs10768043	0.95[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs10836144	0.99[ASN][1000 genomes]
rs10836145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836146	0.99[ASN][1000 genomes]
rs10836147	1.00[ASN][1000 genomes]
rs11032474	0.83[GIH][hapmap]
rs11032481	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11032482	0.99[ASN][1000 genomes]
rs11032485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032486	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11032487	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032489	0.90[ASN][1000 genomes]
rs11032502	0.87[CEU][hapmap];0.87[MEX][hapmap]
rs12272003	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12277616	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12282240	0.83[AMR][1000 genomes]
rs12285326	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12292366	0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12418479	0.87[CHB][hapmap];0.85[GIH][hapmap]
rs12421153	0.87[CHB][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes]
rs12421249	0.83[AMR][1000 genomes]
rs12421526	0.83[CEU][hapmap]
rs12577490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12787303	0.85[CHB][hapmap];0.83[AMR][1000 genomes]
rs12789531	0.80[ASW][hapmap];0.95[CHB][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12795523	0.83[AMR][1000 genomes]
rs12799109	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12803608	0.87[CEU][hapmap]
rs2139177	1.00[ASN][1000 genomes]
rs35836121	0.83[AMR][1000 genomes]
rs3864880	0.83[CEU][hapmap];0.87[MEX][hapmap]
rs4756093	0.87[CHB][hapmap];0.85[GIH][hapmap]
rs7112270	0.83[AMR][1000 genomes]
rs7120707	0.87[CHB][hapmap];0.83[GIH][hapmap]
rs7121633	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7122747	1.00[ASN][1000 genomes]
rs7952389	0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12576882	QSER1	cis	parietal	SCAN
rs12576882	C11orf41	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34020400-34028000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:34025200-34029000	Enhancers	Duodenum Mucosa	Duodenum
3	chr11:34025400-34026600	Enhancers	Fetal Intestine Large	intestine
4	chr11:34025400-34026800	Enhancers	Fetal Intestine Small	intestine

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