Variant report

Variant	rs4756095
Chromosome Location	chr11:34040668-34040669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34039457..34041197-chr11:34043802..34046209,2	K562	blood:
2	chr11:34034770..34037468-chr11:34039227..34043308,3	K562	blood:
3	chr11:34035968..34037772-chr11:34038826..34040727,2	K562	blood:
4	chr11:34039994..34042109-chr11:34072195..34073736,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10836150	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs16925114	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs16925153	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs16925167	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs16925170	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs16925175	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs16925182	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs16925183	0.92[GIH][hapmap];0.83[TSI][hapmap]
rs16925184	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs17367679	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs17699517	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs17700132	0.92[GIH][hapmap];0.83[TSI][hapmap]
rs17700360	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs17700714	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs17771070	0.91[GIH][hapmap]
rs17778759	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs2421459	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs2467392	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs2473929	0.92[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs28768368	0.86[EUR][1000 genomes]
rs2957509	1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs2957514	1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs2957518	0.82[GIH][hapmap]
rs2982587	1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs2982619	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs36117528	0.81[EUR][1000 genomes]
rs4587708	1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs4756096	0.89[EUR][1000 genomes]
rs4756101	0.82[EUR][1000 genomes]
rs57636521	0.84[EUR][1000 genomes]
rs6484694	0.81[EUR][1000 genomes]
rs7104352	0.84[EUR][1000 genomes]
rs7112219	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112450	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122992	1.00[CEU][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497030	0.81[EUR][1000 genomes]
rs7940096	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3475930	chr11:34040624-34040687	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3475941	chr11:34040624-34040687	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4756095	NBAS	trans	parietal	SCAN
rs4756095	ABTB2	cis	parietal	SCAN
rs4756095	NAT10	cis	cerebellum	SCAN
rs4756095	NAT10	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links