Variant report

Variant	rs16925175
Chromosome Location	chr11:34127463-34127464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:34126591-34127750	HepG2	liver:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
2	POLR2A	chr11:34125693-34127647	Hela-S3	cervix:	n/a	n/a
3	TAF7	chr11:34126705-34127463	H1-hESC	embryonic stem cell:	n/a	n/a
4	CREB1	chr11:34126434-34127752	HepG2	liver:	n/a	n/a
5	TBP	chr11:34126465-34127933	Hela-S3	cervix:	n/a	n/a
6	RCOR1	chr11:34125619-34127924	K562	blood:	n/a	n/a
7	BCLAF1	chr11:34125506-34127748	GM12878	blood:	n/a	n/a
8	MAX	chr11:34126522-34128000	K562	blood:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
9	POLR2A	chr11:34124455-34128004	K562	blood:	n/a	n/a
10	POLR2A	chr11:34126038-34127495	HCT-116	colon:	n/a	n/a
11	TBP	chr11:34126331-34128200	K562	blood:	n/a	n/a
12	POLR2A	chr11:34126048-34128116	PBDE	blood:	n/a	n/a
13	MAX	chr11:34126583-34127625	K562	blood:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
14	HEY1	chr11:34126389-34127507	HepG2	liver:	n/a	n/a
15	RELA	chr11:34126070-34127700	GM10847	blood:	n/a	n/a
16	POLR2A	chr11:34125395-34127838	GM12892	blood:	n/a	n/a
17	MAX	chr11:34126520-34127819	ECC-1	luminal epithelium:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
18	ZMIZ1	chr11:34126478-34127694	K562	blood:	n/a	n/a
19	TAF1	chr11:34126767-34127569	HepG2	liver:	n/a	n/a
20	MYC	chr11:34126882-34127590	K562	blood:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
21	MYC	chr11:34126902-34128072	MCF10A-Er-Src	breast:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
22	RUNX3	chr11:34125872-34127516	GM12878	blood:	n/a	n/a
23	POLR2A	chr11:34124137-34127718	PFSK-1	brain:	n/a	n/a
24	ELF1	chr11:34125884-34127485	A549	lung:	n/a	chr11:34127321-34127333
25	MAFK	chr11:34126228-34127496	Hela-S3	cervix:	n/a	chr11:34126412-34126427
26	MYC	chr11:34126565-34127907	K562	blood:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
27	ZKSCAN1	chr11:34126485-34127598	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr11:34126177-34127642	HUVEC	blood vessel:	n/a	n/a
29	MAX	chr11:34126734-34127815	Hela-S3	cervix:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
30	MYC	chr11:34126842-34127768	K562	blood:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
31	MXI1	chr11:34126668-34128061	K562	blood:	n/a	n/a
32	BCLAF1	chr11:34125659-34127536	GM12878	blood:	n/a	n/a
33	SIN3AK20	chr11:34126405-34127662	A549	lung:	n/a	n/a
34	MYBL2	chr11:34126698-34127493	HepG2	liver:	n/a	n/a
35	MYBL2	chr11:34126666-34127542	HepG2	liver:	n/a	n/a
36	SIN3AK20	chr11:34126529-34127523	A549	lung:	n/a	n/a
37	TAF1	chr11:34126616-34127473	H1-neurons	neurons:	n/a	n/a
38	POLR2A	chr11:34125707-34127851	GM19099	blood:	n/a	n/a
39	ELF1	chr11:34126673-34127518	MCF-7	breast:	n/a	chr11:34127321-34127333
40	YY1	chr11:34126807-34127578	ECC-1	luminal epithelium:	n/a	n/a
41	PML	chr11:34125199-34127890	GM12878	blood:	n/a	chr11:34127259-34127267
42	POLR2A	chr11:34125963-34128394	H1-neurons	neurons:	n/a	n/a
43	KAP1	chr11:34126392-34127488	HEK293	kidney:	n/a	chr11:34127259-34127267
44	TCF12	chr11:34126546-34127521	ECC-1	luminal epithelium:	n/a	n/a
45	YY1	chr11:34126374-34127493	GM12878	blood:	n/a	n/a
46	POLR2A	chr11:34126658-34127701	MCF-7	breast:	n/a	n/a
47	POLR2A	chr11:34126211-34127650	GM12878	blood:	n/a	n/a
48	POLR2A	chr11:34126419-34127478	HUVEC	blood vessel:	n/a	n/a
49	MYC	chr11:34126959-34127508	GM12878	blood:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297
50	MAX	chr11:34126645-34127848	HCT-116	colon:	n/a	chr11:34127286-34127297 chr11:34127287-34127296 chr11:34127288-34127295 chr11:34127286-34127297

No.	Distal block	Cell Line	Cell type
1	chr11:34125543..34130810-chr11:34377372..34382966,13	MCF-7	breast:
2	chr11:34126919..34127793-chr19:1591967..1592665,2	Hela-S3	cervix:
3	chr11:34126304..34129768-chr11:34376546..34381116,4	MCF-7	breast:
4	chr11:34112370..34115076-chr11:34127072..34129941,3	K562	blood:
5	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:
6	chr11:34068673..34076707-chr11:34122442..34129826,21	K562	blood:
7	chr11:34071305..34076629-chr11:34124370..34130035,10	MCF-7	breast:
8	chr11:34070943..34077471-chr11:34125498..34130034,9	MCF-7	breast:
9	chr11:34115146..34119310-chr11:34123587..34128957,8	K562	blood:
10	chr11:34126963..34127766-chr2:99952284..99952840,2	NB4	blood:
11	chr11:34127184..34127879-chr18:2655427..2656138,2	Hela-S3	cervix:
12	chr11:34126629..34127570-chr6:25992649..25993532,2	Hela-S3	cervix:
13	chr11:34112088..34115076-chr11:34127034..34129941,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CAPRIN1-1	chr11:34127169-34127710	l_460_chr11:34125501-34127710_ovary

Variant related genes	Relation type
NAT10	TF binding region
ENSG00000135387	Chromatin interaction
ENSG00000101596	Chromatin interaction
ENSG00000071655	Chromatin interaction
ENSG00000166016	Chromatin interaction
ENSG00000272462	Chromatin interaction
ENSG00000115514	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10047428	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10047487	0.87[EUR][1000 genomes]
rs10501132	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10501133	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10836150	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs11552143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418412	1.00[YRI][hapmap]
rs16925114	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925115	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925121	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925126	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925134	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925147	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925153	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925155	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925160	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925163	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925167	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925170	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925173	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925177	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925181	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925182	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925183	0.85[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16925184	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925219	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16926099	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17367679	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17699090	0.86[EUR][1000 genomes]
rs17699505	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699517	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699883	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700132	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700360	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700714	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700877	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17701015	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17771070	0.91[GIH][hapmap];1.00[MEX][hapmap]
rs17771981	0.86[EUR][1000 genomes]
rs17777885	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17777985	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17778417	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778759	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1883958	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2004272	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2421456	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2421457	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2421459	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs2467392	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2467393	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2473929	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2473932	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2957481	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957509	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957514	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2957518	0.82[GIH][hapmap]
rs2982587	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2982617	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2982619	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36117528	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4074368	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4237663	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4587708	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs4755357	0.84[EUR][1000 genomes]
rs4755359	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4756095	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs4756101	0.82[EUR][1000 genomes]
rs4756109	0.90[CEU][hapmap]
rs56693007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56696374	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56973150	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57330513	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57492451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57636521	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58696677	0.98[AFR][1000 genomes]
rs58755000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59158919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59249605	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59359577	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59518134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59650719	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59972955	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59978955	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60015864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60494596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60549862	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60700110	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61171154	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6484694	0.84[EUR][1000 genomes]
rs7104352	0.90[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7125948	1.00[YRI][hapmap]
rs7127581	0.86[EUR][1000 genomes]
rs73497030	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73497035	0.84[EUR][1000 genomes]
rs73497050	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73497064	0.86[EUR][1000 genomes]
rs73500434	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501009	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501017	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501018	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501023	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501048	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501064	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501065	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501097	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7483997	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7925202	0.85[ASW][hapmap];1.00[YRI][hapmap]
rs7925527	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933297	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944654	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7951306	0.85[ASW][hapmap];1.00[YRI][hapmap]
rs7951527	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8191	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs958332	0.90[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs16925175	NAT10	cis	cerebellum	SCAN
rs16925175	NAT10	cis	parietal	SCAN
rs16925175	ABTB2	cis	parietal	SCAN
rs16925175	NBAS	trans	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34125800-34128600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:34125800-34128800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:34126000-34128000	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr11:34126000-34128200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr11:34126000-34128400	Active TSS	H1 Cell Line	embryonic stem cell
6	chr11:34126000-34128400	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr11:34126000-34128400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr11:34126000-34128600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:34126200-34127600	Active TSS	Brain Hippocampus Middle	brain
10	chr11:34126200-34127600	Active TSS	Fetal Brain Female	brain
11	chr11:34126200-34127800	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr11:34126200-34128000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:34126200-34128400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr11:34126200-34128400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr11:34126200-34128400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:34126200-34128400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr11:34126200-34128600	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr11:34126200-34128600	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr11:34126200-34128800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:34126400-34127800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:34126400-34128000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr11:34126400-34128000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:34126400-34128000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr11:34126400-34128000	Active TSS	Aorta	Aorta
25	chr11:34126400-34128000	Active TSS	Esophagus	oesophagus
26	chr11:34126400-34128000	Active TSS	Left Ventricle	heart
27	chr11:34126400-34128200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:34126400-34128200	Active TSS	Fetal Muscle Trunk	muscle
29	chr11:34126400-34128200	Active TSS	Right Atrium	heart
30	chr11:34126400-34128400	Active TSS	Right Ventricle	heart
31	chr11:34126400-34128400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr11:34126400-34128800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:34126600-34127600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:34126600-34127600	Active TSS	Duodenum Mucosa	Duodenum
35	chr11:34126600-34127600	Active TSS	Fetal Stomach	stomach
36	chr11:34126600-34127600	Active TSS	Stomach Mucosa	stomach
37	chr11:34126600-34127600	Active TSS	Thymus	Thymus
38	chr11:34126600-34127800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:34126600-34127800	Active TSS	Brain Angular Gyrus	brain
40	chr11:34126600-34127800	Active TSS	Brain Anterior Caudate	brain
41	chr11:34126600-34127800	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr11:34126600-34127800	Active TSS	Brain Substantia Nigra	brain
43	chr11:34126600-34127800	Active TSS	Colon Smooth Muscle	Colon
44	chr11:34126600-34127800	Active TSS	Fetal Intestine Large	intestine
45	chr11:34126600-34127800	Active TSS	Fetal Lung	lung
46	chr11:34126600-34127800	Active TSS	Pancreas	Pancrea
47	chr11:34126600-34128000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:34126600-34128000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:34126600-34128000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:34126600-34128000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links