Variant report

Variant	rs2421456
Chromosome Location	chr11:34080060-34080061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34077456..34080361-chr11:34145173..34147972,2	MCF-7	breast:
2	chr11:33856227..33858061-chr11:34079833..34082068,2	K562	blood:
3	chr11:34079591..34082154-chr11:34095568..34097319,2	MCF-7	breast:
4	chr11:34078306..34080803-chr11:34146399..34149282,2	K562	blood:

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10047428	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10047487	0.95[EUR][1000 genomes]
rs10501132	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501133	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10836150	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11032506	0.84[AFR][1000 genomes]
rs11032507	0.84[AFR][1000 genomes]
rs11552143	0.86[EUR][1000 genomes]
rs12418005	0.84[AFR][1000 genomes]
rs12418412	1.00[YRI][hapmap]
rs12419629	0.84[AFR][1000 genomes]
rs16925114	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925115	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925121	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925126	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925134	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925147	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925153	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925155	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925160	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925163	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925167	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925170	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925173	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925175	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925177	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925181	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925182	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925183	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16925184	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925219	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16926099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367679	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17699090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699505	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699517	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699883	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17700132	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17700360	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17700714	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17700877	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17701015	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17771981	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17777885	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17777985	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17778417	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17778759	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1883958	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2004272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421459	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2467392	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2467393	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2473929	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2473932	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs28768368	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957481	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2957509	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2957514	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2982587	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2982617	1.00[CEU][hapmap]
rs2982619	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs36117528	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4074368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237663	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4587708	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4755357	0.91[EUR][1000 genomes]
rs4755359	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4756096	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4756101	0.96[EUR][1000 genomes]
rs4756109	0.91[CEU][hapmap]
rs56693007	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs56696374	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56973150	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57330513	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57492451	0.86[EUR][1000 genomes]
rs57636521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58696677	0.91[AFR][1000 genomes]
rs58755000	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59158919	0.86[EUR][1000 genomes]
rs59249605	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59359577	0.81[EUR][1000 genomes]
rs59518134	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59650719	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59972955	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59978955	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60015864	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs60494596	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs60549862	0.82[EUR][1000 genomes]
rs60700110	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61171154	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6484694	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7102797	0.84[AFR][1000 genomes]
rs7104352	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7117217	0.84[AFR][1000 genomes]
rs7117410	0.84[AFR][1000 genomes]
rs7122992	0.81[CEU][hapmap]
rs7125948	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs7127581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73486549	0.84[AFR][1000 genomes]
rs73486551	0.84[AFR][1000 genomes]
rs73497017	0.84[AFR][1000 genomes]
rs73497030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497035	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73500434	0.84[EUR][1000 genomes]
rs73501009	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501017	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501018	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501023	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501037	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73501038	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73501048	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73501059	0.86[EUR][1000 genomes]
rs73501064	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73501065	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73501069	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73501097	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7483997	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7925202	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7925527	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7933297	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7944654	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7951306	1.00[YRI][hapmap]
rs7951527	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8191	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs958332	0.91[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976485	chr11:34078142-34082109	Strong transcription Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34087000	Weak transcription	Gastric	stomach
2	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
5	chr11:34075600-34082600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr11:34075600-34082600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr11:34075600-34082800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr11:34075600-34088400	Weak transcription	Right Atrium	heart
9	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:34075800-34083400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
13	chr11:34076200-34081400	Strong transcription	HSMM	muscle
14	chr11:34076200-34089400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:34076600-34080200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:34076800-34080200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
18	chr11:34077200-34080400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:34077200-34081400	Weak transcription	Lung	lung
20	chr11:34077200-34081600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:34077200-34081600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:34077200-34082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:34077200-34082800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:34077200-34082800	Weak transcription	Fetal Stomach	stomach
25	chr11:34077200-34082800	Weak transcription	Left Ventricle	heart
26	chr11:34077200-34082800	Weak transcription	Right Ventricle	heart
27	chr11:34077200-34082800	Weak transcription	Thymus	Thymus
28	chr11:34077200-34083000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:34077200-34083000	Weak transcription	Spleen	Spleen
30	chr11:34077200-34084800	Weak transcription	Pancreas	Pancrea
31	chr11:34077200-34087800	Strong transcription	Fetal Thymus	thymus
32	chr11:34077200-34088600	Weak transcription	Ovary	ovary
33	chr11:34077400-34080200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:34077400-34082600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr11:34077400-34083200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:34077400-34089200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:34077400-34090200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:34077400-34094800	Weak transcription	Colonic Mucosa	Colon
39	chr11:34077600-34080400	Enhancers	HepG2	liver
40	chr11:34078200-34080400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:34078200-34082200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr11:34078200-34084000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:34078200-34087800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:34078200-34092000	Weak transcription	Stomach Mucosa	stomach
45	chr11:34078400-34080600	Genic enhancers	Primary hematopoietic stem cells	blood
46	chr11:34078400-34081800	Weak transcription	NHDF-Ad	bronchial
47	chr11:34078600-34080800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:34078600-34082600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr11:34078600-34085400	Strong transcription	NH-A	brain
50	chr11:34078800-34080800	Genic enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links