Variant report

Variant	rs73497035
Chromosome Location	chr11:34078516-34078517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34077456..34080361-chr11:34145173..34147972,2	MCF-7	breast:
2	chr11:34078306..34080803-chr11:34146399..34149282,2	K562	blood:
3	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10047428	0.93[EUR][1000 genomes]
rs10047487	0.93[EUR][1000 genomes]
rs10501132	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10501133	0.81[EUR][1000 genomes]
rs10836150	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11552143	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925114	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925115	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925121	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925126	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925134	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925147	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925153	0.93[EUR][1000 genomes]
rs16925155	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925160	0.84[EUR][1000 genomes]
rs16925163	0.84[EUR][1000 genomes]
rs16925167	0.84[EUR][1000 genomes]
rs16925170	0.84[EUR][1000 genomes]
rs16925173	0.84[EUR][1000 genomes]
rs16925175	0.84[EUR][1000 genomes]
rs16925177	0.84[EUR][1000 genomes]
rs16925181	0.84[EUR][1000 genomes]
rs16925182	0.84[EUR][1000 genomes]
rs16925184	0.84[EUR][1000 genomes]
rs16925219	0.81[EUR][1000 genomes]
rs16926099	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17367679	0.82[EUR][1000 genomes]
rs17699090	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17699505	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17699517	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17699883	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17700132	0.84[EUR][1000 genomes]
rs17700360	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17700714	0.84[EUR][1000 genomes]
rs17700877	0.81[EUR][1000 genomes]
rs17701015	0.81[EUR][1000 genomes]
rs17771981	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17777885	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17777985	0.95[EUR][1000 genomes]
rs17778417	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17778759	0.84[EUR][1000 genomes]
rs1883958	0.84[EUR][1000 genomes]
rs2004272	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2421456	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2421457	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2421459	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28768368	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2957481	0.84[EUR][1000 genomes]
rs2957509	0.84[EUR][1000 genomes]
rs2982587	0.82[EUR][1000 genomes]
rs36117528	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4074368	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4237663	0.93[EUR][1000 genomes]
rs4587708	0.93[EUR][1000 genomes]
rs4755357	0.89[EUR][1000 genomes]
rs4755359	0.93[EUR][1000 genomes]
rs4756096	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4756101	0.95[EUR][1000 genomes]
rs56693007	0.84[EUR][1000 genomes]
rs56696374	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56973150	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57330513	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57492451	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs57636521	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58755000	0.84[EUR][1000 genomes]
rs59158919	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59249605	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59518134	0.84[EUR][1000 genomes]
rs59650719	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59972955	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59978955	0.91[EUR][1000 genomes]
rs60015864	0.84[EUR][1000 genomes]
rs60494596	0.84[EUR][1000 genomes]
rs60549862	0.81[EUR][1000 genomes]
rs60700110	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61171154	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6484694	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7104352	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7127581	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497030	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73497050	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497064	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73500434	0.82[EUR][1000 genomes]
rs73501009	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73501017	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501018	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501023	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501037	0.84[EUR][1000 genomes]
rs73501038	0.82[EUR][1000 genomes]
rs73501048	0.82[EUR][1000 genomes]
rs73501059	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73501064	0.82[EUR][1000 genomes]
rs73501065	0.82[EUR][1000 genomes]
rs73501069	0.84[EUR][1000 genomes]
rs73501097	0.82[EUR][1000 genomes]
rs7483997	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7925527	0.84[EUR][1000 genomes]
rs7933297	0.81[EUR][1000 genomes]
rs7944654	0.93[EUR][1000 genomes]
rs8191	0.82[EUR][1000 genomes]
rs958332	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976485	chr11:34078142-34082109	Strong transcription Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73497035	NAT10	cis	Stomach	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34073800-34079000	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:34074600-34079200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
3	chr11:34074800-34078800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:34075400-34087000	Weak transcription	Gastric	stomach
5	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
8	chr11:34075600-34079000	Enhancers	Brain Hippocampus Middle	brain
9	chr11:34075600-34079400	Weak transcription	Psoas Muscle	Psoas
10	chr11:34075600-34082600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:34075600-34082600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:34075600-34082800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr11:34075600-34088400	Weak transcription	Right Atrium	heart
14	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:34075800-34079600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr11:34075800-34083400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
19	chr11:34076000-34079000	Enhancers	Fetal Heart	heart
20	chr11:34076000-34079200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:34076200-34081400	Strong transcription	HSMM	muscle
22	chr11:34076200-34089400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:34076400-34079000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:34076400-34079200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
25	chr11:34076400-34079200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:34076400-34079600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
27	chr11:34076600-34079000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:34076600-34079000	Genic enhancers	Muscle Satellite Cultured Cells	--
29	chr11:34076600-34079000	Genic enhancers	Fetal Intestine Large	intestine
30	chr11:34076600-34079200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
31	chr11:34076600-34079200	Genic enhancers	HUVEC	blood vessel
32	chr11:34076600-34079600	Enhancers	Fetal Brain Male	brain
33	chr11:34076600-34080200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:34076800-34079000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:34076800-34080200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:34077000-34079000	Enhancers	Brain Substantia Nigra	brain
37	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
38	chr11:34077200-34078600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr11:34077200-34078800	Genic enhancers	Primary B cells from cord blood	blood
40	chr11:34077200-34078800	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:34077200-34078800	Weak transcription	Placenta	Placenta
42	chr11:34077200-34079000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:34077200-34079000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr11:34077200-34079000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr11:34077200-34079000	Enhancers	Adipose Nuclei	Adipose
46	chr11:34077200-34079000	Enhancers	Brain Cingulate Gyrus	brain
47	chr11:34077200-34079200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:34077200-34079200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:34077200-34079200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:34077200-34079200	Enhancers	Brain Anterior Caudate	brain

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