Variant report

Variant	rs17701015
Chromosome Location	chr11:34160193-34160194
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34159989-34160201	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:34159271-34160240	K562	blood:	n/a	n/a
3	POLR2A	chr11:34159586-34160300	GM12892	blood:	n/a	n/a
4	POLR2A	chr11:34159255-34160272	K562	blood:	n/a	n/a
5	POLR2A	chr11:34160041-34160683	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr11:34159338-34160229	K562	blood:	n/a	n/a
7	POLR2A	chr11:34158580-34160204	K562	blood:	n/a	n/a
8	POLR2A	chr11:34160192-34160227	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr11:34160061-34160213	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34157193..34160201-chr11:34169377..34172451,3	K562	blood:
2	chr11:34157193..34160201-chr11:34169377..34173390,4	K562	blood:

Variant related genes	Relation type
NAT10	TF binding region

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10047428	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10047487	0.84[EUR][1000 genomes]
rs10501132	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10501133	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10836150	0.89[CEU][hapmap]
rs11552143	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925114	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925115	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925117	0.93[YRI][hapmap]
rs16925121	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925126	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925134	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925147	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925153	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16925155	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925160	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925163	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925167	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925170	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925173	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925175	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925177	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925181	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925182	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925183	1.00[CEU][hapmap]
rs16925184	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925219	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16926099	0.82[EUR][1000 genomes]
rs17367679	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17699090	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17699505	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699517	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699883	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700132	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700360	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700714	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700877	1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17771981	0.82[EUR][1000 genomes]
rs17777885	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17777985	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17778417	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17778759	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1883958	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2004272	0.82[EUR][1000 genomes]
rs2421456	0.82[EUR][1000 genomes]
rs2421457	0.82[EUR][1000 genomes]
rs2421459	0.89[CEU][hapmap];0.84[YRI][hapmap]
rs2467392	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2467393	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2473929	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2473932	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2957481	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2957509	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2957514	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2982587	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2982617	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2982619	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36117528	0.81[EUR][1000 genomes]
rs4074368	0.82[EUR][1000 genomes]
rs4237663	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4587708	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4755357	0.81[EUR][1000 genomes]
rs4755359	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4756109	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs56693007	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56696374	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56973150	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57330513	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57492451	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58755000	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59158919	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59249605	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59359577	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59518134	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59650719	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59972955	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59978955	0.80[AMR][1000 genomes]
rs60015864	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60494596	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60549862	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60700110	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61171154	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6484694	0.81[EUR][1000 genomes]
rs7104352	0.91[CEU][hapmap]
rs7122992	0.81[CEU][hapmap]
rs7127581	0.82[EUR][1000 genomes]
rs73497030	0.80[EUR][1000 genomes]
rs73497035	0.81[EUR][1000 genomes]
rs73497050	0.82[EUR][1000 genomes]
rs73497064	0.82[EUR][1000 genomes]
rs73500434	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501009	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73501017	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501018	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501023	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501037	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501038	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501048	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501059	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501064	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501065	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501069	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501097	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7483997	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7925527	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7933297	1.00[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944654	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7951527	1.00[CEU][hapmap]
rs8191	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs958332	0.91[CEU][hapmap];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17701015	NAT10	cis	Stomach	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128000-34168000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:34128200-34169800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34128600-34173200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
5	chr11:34128800-34163600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:34129000-34170000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:34129000-34177400	Strong transcription	Osteobl	bone
9	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:34129200-34166400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr11:34129200-34168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:34129200-34169800	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr11:34129200-34169800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:34129400-34172600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
19	chr11:34129600-34160600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:34129600-34167200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:34129600-34168600	Strong transcription	Placenta	Placenta
22	chr11:34129600-34169400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:34129600-34170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:34129600-34171400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:34129600-34171800	Strong transcription	Fetal Muscle Leg	muscle
26	chr11:34129600-34172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
28	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:34129600-34178200	Strong transcription	Liver	Liver
30	chr11:34129800-34163800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:34129800-34167200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:34129800-34169800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:34129800-34170000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr11:34129800-34170000	Strong transcription	NH-A	brain
35	chr11:34129800-34171800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:34129800-34172000	Strong transcription	Fetal Intestine Large	intestine
37	chr11:34129800-34172800	Strong transcription	Ovary	ovary
38	chr11:34129800-34173200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:34129800-34173200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr11:34129800-34175000	Strong transcription	Primary T cells from cord blood	blood
41	chr11:34129800-34175000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:34129800-34175600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:34130000-34171000	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:34130000-34172400	Strong transcription	HepG2	liver
45	chr11:34130000-34173600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:34130000-34174600	Strong transcription	Dnd41	blood
47	chr11:34130000-34177000	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:34130000-34181800	Strong transcription	A549	lung
49	chr11:34130200-34172800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:34130200-34173200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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