Variant report

Variant	rs17771981
Chromosome Location	chr11:34086192-34086193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34082212..34086250-chr11:34086820..34091232,6	MCF-7	breast:
2	chr11:34082260..34086338-chr11:34099518..34101864,3	K562	blood:
3	chr11:34082068..34083571-chr11:34083859..34086812,2	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10047428	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10047487	0.95[EUR][1000 genomes]
rs10501132	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501133	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10836150	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11552143	0.86[EUR][1000 genomes]
rs16925114	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925115	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925121	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925126	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925134	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925147	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925153	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs16925155	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925160	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16925163	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16925167	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs16925170	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs16925173	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16925175	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs16925177	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16925181	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16925182	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs16925183	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap]
rs16925184	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs16925219	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16926099	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367679	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs17699090	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699505	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699517	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699883	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17700132	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17700360	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17700714	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17700877	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17701015	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17771070	0.91[GIH][hapmap];1.00[MEX][hapmap]
rs17777885	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17777985	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17778417	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17778759	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs1883958	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2004272	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421456	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421457	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421459	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2467392	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2467393	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2473929	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2473932	1.00[CEU][hapmap]
rs28768368	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957481	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2957509	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2957514	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2957518	0.82[GIH][hapmap]
rs2982587	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs2982617	1.00[CEU][hapmap]
rs2982619	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs36117528	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4074368	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237663	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4587708	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4755357	0.91[EUR][1000 genomes]
rs4755359	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4756095	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs4756096	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4756101	0.96[EUR][1000 genomes]
rs4756109	0.90[CEU][hapmap]
rs56693007	0.86[EUR][1000 genomes]
rs56696374	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56973150	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57330513	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57492451	0.86[EUR][1000 genomes]
rs57636521	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58755000	0.86[EUR][1000 genomes]
rs59158919	0.86[EUR][1000 genomes]
rs59249605	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59359577	0.81[EUR][1000 genomes]
rs59518134	0.86[EUR][1000 genomes]
rs59650719	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59972955	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59978955	0.93[EUR][1000 genomes]
rs60015864	0.86[EUR][1000 genomes]
rs60494596	0.86[EUR][1000 genomes]
rs60549862	0.82[EUR][1000 genomes]
rs60700110	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61171154	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6484694	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7104352	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7127581	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497030	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497035	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497050	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497064	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73500434	0.84[EUR][1000 genomes]
rs73501009	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501017	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501018	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501023	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501037	0.86[EUR][1000 genomes]
rs73501038	0.84[EUR][1000 genomes]
rs73501048	0.84[EUR][1000 genomes]
rs73501059	0.86[EUR][1000 genomes]
rs73501064	0.84[EUR][1000 genomes]
rs73501065	0.84[EUR][1000 genomes]
rs73501069	0.86[EUR][1000 genomes]
rs73501097	0.84[EUR][1000 genomes]
rs7483997	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7925527	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7933297	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7944654	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7951527	1.00[CEU][hapmap]
rs8191	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs958332	0.90[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17771981	NAT10	cis	cerebellum	SCAN
rs17771981	ABTB2	cis	parietal	SCAN
rs17771981	NBAS	trans	parietal	SCAN
rs17771981	NAT10	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34087000	Weak transcription	Gastric	stomach
2	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
5	chr11:34075600-34088400	Weak transcription	Right Atrium	heart
6	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
9	chr11:34076200-34089400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
11	chr11:34077200-34087800	Strong transcription	Fetal Thymus	thymus
12	chr11:34077200-34088600	Weak transcription	Ovary	ovary
13	chr11:34077400-34089200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:34077400-34090200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:34077400-34094800	Weak transcription	Colonic Mucosa	Colon
16	chr11:34078200-34087800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:34078200-34092000	Weak transcription	Stomach Mucosa	stomach
18	chr11:34078800-34089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:34079000-34089200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:34079000-34089400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:34079000-34092600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:34079000-34094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:34079000-34095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:34079200-34087800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:34079600-34089600	Weak transcription	Fetal Brain Male	brain
27	chr11:34079800-34089200	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:34080000-34087200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:34080200-34087000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:34080800-34089400	Weak transcription	Brain Angular Gyrus	brain
31	chr11:34081200-34087200	Weak transcription	Brain Germinal Matrix	brain
32	chr11:34081200-34089400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:34081400-34089600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:34081400-34090000	Strong transcription	Dnd41	blood
35	chr11:34081600-34086400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:34082000-34087600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
37	chr11:34082200-34087600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:34082400-34087000	Weak transcription	Liver	Liver
39	chr11:34082400-34087000	Weak transcription	NHDF-Ad	bronchial
40	chr11:34082600-34087200	Strong transcription	HSMM	muscle
41	chr11:34082800-34086400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:34082800-34087000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:34082800-34087000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:34083200-34089000	Weak transcription	Right Ventricle	heart
45	chr11:34083400-34087400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:34083400-34088600	Weak transcription	Left Ventricle	heart
47	chr11:34083400-34088600	Weak transcription	Spleen	Spleen
48	chr11:34083400-34089200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:34083400-34089400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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