Variant report

Variant	rs4756096
Chromosome Location	chr11:34049028-34049029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34047888..34049807-chr11:34058557..34060291,2	K562	blood:
2	chr11:34040788..34042322-chr11:34047509..34050356,2	K562	blood:
3	chr11:34048725..34050280-chr11:34056385..34058046,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10047428	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10047487	0.81[EUR][1000 genomes]
rs10501132	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10501133	0.88[CEU][hapmap]
rs10836150	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925114	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925115	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925121	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925126	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925134	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925147	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925153	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs16925155	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925160	0.88[CEU][hapmap]
rs16925163	0.88[CEU][hapmap]
rs16925167	0.86[CEU][hapmap]
rs16925170	0.86[CEU][hapmap]
rs16925173	0.88[CEU][hapmap]
rs16925175	0.86[CEU][hapmap]
rs16925177	0.88[CEU][hapmap]
rs16925181	0.88[CEU][hapmap]
rs16925182	0.86[CEU][hapmap]
rs16925183	0.86[CEU][hapmap]
rs16925184	0.86[CEU][hapmap]
rs16925219	0.88[CEU][hapmap]
rs16926099	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17367679	0.86[CEU][hapmap]
rs17699090	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699505	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17699517	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17699883	0.87[CEU][hapmap]
rs17700132	0.86[CEU][hapmap]
rs17700360	0.86[CEU][hapmap]
rs17700714	0.86[CEU][hapmap]
rs17700877	0.88[CEU][hapmap]
rs17701015	0.88[CEU][hapmap]
rs17771981	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17777885	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17777985	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs17778417	0.88[CEU][hapmap]
rs17778759	0.86[CEU][hapmap]
rs1883958	0.88[CEU][hapmap]
rs2004272	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2421456	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2421457	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2421459	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2467392	0.86[CEU][hapmap]
rs2467393	0.88[CEU][hapmap]
rs2473929	0.86[CEU][hapmap]
rs2473932	0.88[CEU][hapmap]
rs28768368	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2957481	0.88[CEU][hapmap]
rs2957509	0.86[CEU][hapmap]
rs2957514	0.86[CEU][hapmap]
rs2982587	0.86[CEU][hapmap]
rs2982617	0.88[CEU][hapmap]
rs2982619	0.86[CEU][hapmap]
rs36117528	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4074368	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4237663	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4587708	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs4755359	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4756095	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs4756101	0.86[EUR][1000 genomes]
rs56696374	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56973150	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57330513	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57636521	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59249605	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59650719	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59972955	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60700110	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61171154	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6484694	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7104352	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7112219	0.89[EUR][1000 genomes]
rs7112450	0.89[EUR][1000 genomes]
rs7122992	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs7127581	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73497030	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73497035	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73497050	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73497064	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501009	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73501017	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501018	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501023	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7483997	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7925527	0.88[CEU][hapmap]
rs7933297	0.88[CEU][hapmap]
rs7940096	0.87[EUR][1000 genomes]
rs7944654	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7951527	0.87[CEU][hapmap]
rs8191	0.88[CEU][hapmap]
rs958332	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3399258	chr11:34046901-34049749	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3438684	chr11:34047026-34049824	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3420049	chr11:34047526-34049324	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34046600-34049400	Weak transcription	Aorta	Aorta
2	chr11:34048800-34049200	Enhancers	Liver	Liver
3	chr11:34048800-34049400	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr11:34048800-34049600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr11:34048800-34050200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:34048800-34050400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34048800-34050400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:34048800-34050400	Enhancers	Pancreas	Pancrea
9	chr11:34048800-34050600	Enhancers	Fetal Intestine Small	intestine
10	chr11:34048800-34052400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:34049000-34049200	Enhancers	HepG2	liver
12	chr11:34049000-34049400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:34049000-34049800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:34049000-34049800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:34049000-34050200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:34049000-34050200	Enhancers	Colonic Mucosa	Colon
17	chr11:34049000-34050600	Enhancers	Fetal Intestine Large	intestine
18	chr11:34049000-34050600	Enhancers	Rectal Mucosa Donor 31	rectum

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