Variant report

Variant	rs7127581
Chromosome Location	chr11:34090729-34090730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34082212..34086250-chr11:34086820..34091232,6	MCF-7	breast:
2	chr11:34087929..34091218-chr11:34097690..34100394,3	K562	blood:
3	chr11:34090126..34091867-chr11:34126432..34129019,2	K562	blood:
4	chr11:34017295..34020752-chr11:34087860..34091315,4	K562	blood:
5	chr11:34070782..34075925-chr11:34090363..34101891,14	MCF-7	breast:
6	chr11:34089116..34091793-chr11:34101123..34102722,2	K562	blood:
7	chr11:34082429..34084650-chr11:34089677..34091311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10047428	0.95[EUR][1000 genomes]
rs10047487	0.95[EUR][1000 genomes]
rs10501132	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501133	0.82[EUR][1000 genomes]
rs10836150	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11552143	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16925114	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925115	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925121	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925126	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925134	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925147	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925153	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925155	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925160	0.86[EUR][1000 genomes]
rs16925163	0.86[EUR][1000 genomes]
rs16925167	0.86[EUR][1000 genomes]
rs16925170	0.86[EUR][1000 genomes]
rs16925173	0.86[EUR][1000 genomes]
rs16925175	0.86[EUR][1000 genomes]
rs16925177	0.86[EUR][1000 genomes]
rs16925181	0.86[EUR][1000 genomes]
rs16925182	0.86[EUR][1000 genomes]
rs16925184	0.86[EUR][1000 genomes]
rs16925219	0.82[EUR][1000 genomes]
rs16926099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367679	0.84[EUR][1000 genomes]
rs17699090	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699505	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699517	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699883	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17700132	0.86[EUR][1000 genomes]
rs17700360	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17700714	0.86[EUR][1000 genomes]
rs17700877	0.82[EUR][1000 genomes]
rs17701015	0.82[EUR][1000 genomes]
rs17771981	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17777885	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17777985	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17778417	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17778759	0.86[EUR][1000 genomes]
rs1883958	0.86[EUR][1000 genomes]
rs2004272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421459	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2467392	0.81[EUR][1000 genomes]
rs2467393	0.81[EUR][1000 genomes]
rs2473929	0.81[EUR][1000 genomes]
rs28768368	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957481	0.86[EUR][1000 genomes]
rs2957509	0.86[EUR][1000 genomes]
rs2957514	0.81[EUR][1000 genomes]
rs2982587	0.84[EUR][1000 genomes]
rs2982619	0.81[EUR][1000 genomes]
rs36117528	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4074368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237663	0.95[EUR][1000 genomes]
rs4587708	0.95[EUR][1000 genomes]
rs4755357	0.91[EUR][1000 genomes]
rs4755359	0.95[EUR][1000 genomes]
rs4756096	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4756101	0.96[EUR][1000 genomes]
rs56693007	0.86[EUR][1000 genomes]
rs56696374	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56973150	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57330513	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57492451	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs57636521	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58755000	0.86[EUR][1000 genomes]
rs59158919	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59249605	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59359577	0.81[EUR][1000 genomes]
rs59518134	0.86[EUR][1000 genomes]
rs59650719	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59972955	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59978955	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60015864	0.86[EUR][1000 genomes]
rs60494596	0.86[EUR][1000 genomes]
rs60549862	0.82[EUR][1000 genomes]
rs60700110	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61171154	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6484694	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7104352	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73497030	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497035	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73500434	0.84[EUR][1000 genomes]
rs73501009	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501017	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501018	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501023	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501037	0.86[EUR][1000 genomes]
rs73501038	0.84[EUR][1000 genomes]
rs73501048	0.84[EUR][1000 genomes]
rs73501059	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73501064	0.84[EUR][1000 genomes]
rs73501065	0.84[EUR][1000 genomes]
rs73501069	0.86[EUR][1000 genomes]
rs73501097	0.84[EUR][1000 genomes]
rs7483997	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7925527	0.86[EUR][1000 genomes]
rs7933297	0.82[EUR][1000 genomes]
rs7944654	0.95[EUR][1000 genomes]
rs8191	0.84[EUR][1000 genomes]
rs958332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7127581	NAT10	cis	Stomach	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
4	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
7	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
8	chr11:34077400-34094800	Weak transcription	Colonic Mucosa	Colon
9	chr11:34078200-34092000	Weak transcription	Stomach Mucosa	stomach
10	chr11:34079000-34092600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:34079000-34094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:34079000-34095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:34083600-34091800	Weak transcription	Fetal Stomach	stomach
16	chr11:34083600-34095000	Weak transcription	Lung	lung
17	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:34085200-34093200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:34085200-34093200	Weak transcription	Thymus	Thymus
20	chr11:34085200-34093200	Weak transcription	HMEC	breast
21	chr11:34085200-34093600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:34085400-34094800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:34085600-34092000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:34086000-34093000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:34086400-34091800	Weak transcription	Fetal Intestine Large	intestine
26	chr11:34086600-34093400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:34087800-34091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:34087800-34094400	Weak transcription	Brain Germinal Matrix	brain
29	chr11:34088400-34093200	Weak transcription	Placenta	Placenta
30	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:34088800-34095800	Strong transcription	Hela-S3	cervix
33	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:34089600-34091600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr11:34089600-34091600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:34089600-34091800	Weak transcription	Fetal Intestine Small	intestine
37	chr11:34089600-34104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:34089800-34091200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:34089800-34092600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:34089800-34092600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:34089800-34092800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:34089800-34093400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:34089800-34093400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:34089800-34095400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:34089800-34096200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:34090000-34091200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:34090000-34091200	Weak transcription	Dnd41	blood
48	chr11:34090000-34091400	Enhancers	Primary T cells from cord blood	blood
49	chr11:34090000-34091400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:34090000-34091600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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