Variant report

Variant	rs73501097
Chromosome Location	chr11:34141875-34141876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34135311..34137752-chr11:34141204..34143736,2	MCF-7	breast:
2	chr11:34137052..34139427-chr11:34141511..34144256,2	K562	blood:
3	chr11:34140966..34144529-chr11:34161889..34164929,3	K562	blood:
4	chr11:34140868..34142669-chr11:34158761..34161597,2	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10047428	0.89[EUR][1000 genomes]
rs10047487	0.89[EUR][1000 genomes]
rs10501132	0.84[EUR][1000 genomes]
rs10501133	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11552143	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925114	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16925115	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16925121	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925126	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925134	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925147	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925153	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925155	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925160	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925163	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925167	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925170	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925173	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925175	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925177	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925181	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925182	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925184	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925219	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16926099	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17367679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699090	0.84[EUR][1000 genomes]
rs17699505	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17699517	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17699883	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17700132	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17700360	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17700714	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17700877	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17701015	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17771981	0.84[EUR][1000 genomes]
rs17777885	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17777985	0.87[EUR][1000 genomes]
rs17778417	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17778759	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1883958	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2004272	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2421456	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2421457	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2467392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2467393	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2473929	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2473932	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2957481	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2957509	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2957514	0.96[EUR][1000 genomes]
rs2982587	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2982617	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2982619	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36117528	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4074368	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4237663	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4587708	0.89[EUR][1000 genomes]
rs4755357	0.86[EUR][1000 genomes]
rs4755359	0.89[EUR][1000 genomes]
rs4756101	0.84[EUR][1000 genomes]
rs56693007	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56696374	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56973150	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57330513	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57492451	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57636521	0.82[AFR][1000 genomes]
rs58696677	0.91[AFR][1000 genomes]
rs58755000	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59158919	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59249605	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59359577	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59518134	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59650719	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59972955	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59978955	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60015864	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60494596	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60549862	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60700110	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61171154	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6484694	0.86[EUR][1000 genomes]
rs7104352	0.82[AFR][1000 genomes]
rs7127581	0.84[EUR][1000 genomes]
rs73497030	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73497035	0.82[EUR][1000 genomes]
rs73497050	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73497064	0.84[EUR][1000 genomes]
rs73500434	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501009	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501017	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501018	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501023	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501037	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501038	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501059	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501064	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501069	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7483997	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7925527	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7933297	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7944654	0.89[EUR][1000 genomes]
rs8191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs958332	0.84[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128000-34168000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:34128200-34169800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34128600-34173200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
5	chr11:34128800-34163600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:34129000-34147200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:34129000-34150200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:34129000-34157200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:34129000-34170000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:34129000-34177400	Strong transcription	Osteobl	bone
12	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:34129200-34151200	Strong transcription	Stomach Smooth Muscle	stomach
14	chr11:34129200-34166400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:34129200-34168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:34129200-34169800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr11:34129200-34169800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:34129400-34151200	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr11:34129400-34172600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
24	chr11:34129600-34145200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:34129600-34145400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:34129600-34149600	Strong transcription	NHEK	skin
27	chr11:34129600-34150200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:34129600-34160600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:34129600-34167200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:34129600-34168600	Strong transcription	Placenta	Placenta
31	chr11:34129600-34169400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:34129600-34170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:34129600-34171400	Strong transcription	Fetal Muscle Trunk	muscle
34	chr11:34129600-34171800	Strong transcription	Fetal Muscle Leg	muscle
35	chr11:34129600-34172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
37	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:34129600-34178200	Strong transcription	Liver	Liver
39	chr11:34129800-34143000	Strong transcription	Right Ventricle	heart
40	chr11:34129800-34145200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:34129800-34145200	Strong transcription	Brain Substantia Nigra	brain
42	chr11:34129800-34146600	Strong transcription	Brain Hippocampus Middle	brain
43	chr11:34129800-34147000	Strong transcription	HMEC	breast
44	chr11:34129800-34150000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:34129800-34151200	Strong transcription	Brain Cingulate Gyrus	brain
46	chr11:34129800-34153400	Strong transcription	Left Ventricle	heart
47	chr11:34129800-34163800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:34129800-34167200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:34129800-34169800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:34129800-34170000	Strong transcription	Rectal Mucosa Donor 31	rectum

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