Variant report

Variant	rs10047428
Chromosome Location	chr11:34097209-34097210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34095947..34097764-chr11:34100722..34102411,2	K562	blood:
2	chr11:34093333..34095237-chr11:34096530..34098853,2	K562	blood:
3	chr11:34079591..34082154-chr11:34095568..34097319,2	MCF-7	breast:
4	chr11:34094865..34097334-chr11:34103364..34106119,3	K562	blood:
5	chr11:34071145..34073619-chr11:34096560..34098129,2	K562	blood:
6	chr11:34070782..34075925-chr11:34090363..34101891,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10047487	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501132	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10501133	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10836150	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs11552143	0.87[EUR][1000 genomes]
rs16925114	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16925115	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16925121	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16925126	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16925134	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16925147	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16925153	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16925155	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16925160	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925163	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925167	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925170	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925173	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925175	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925177	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925181	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925182	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925183	1.00[CEU][hapmap]
rs16925184	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16925219	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16926099	0.95[EUR][1000 genomes]
rs17367679	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17699090	0.95[EUR][1000 genomes]
rs17699505	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17699517	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17699883	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17700132	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17700360	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17700714	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17700877	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17701015	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17771981	0.95[EUR][1000 genomes]
rs17777885	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17777985	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17778417	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17778759	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1883958	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2004272	0.95[EUR][1000 genomes]
rs2421456	0.95[EUR][1000 genomes]
rs2421457	0.95[EUR][1000 genomes]
rs2421459	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs2467392	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2467393	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2473929	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2473932	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2957481	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2957509	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2957514	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2982587	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2982617	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2982619	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs36117528	0.96[EUR][1000 genomes]
rs4074368	0.95[EUR][1000 genomes]
rs4237663	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4587708	1.00[CEU][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4755357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4755358	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4755359	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4756096	0.81[EUR][1000 genomes]
rs4756101	0.95[EUR][1000 genomes]
rs4756109	1.00[CEU][hapmap]
rs56693007	0.87[EUR][1000 genomes]
rs56696374	0.98[EUR][1000 genomes]
rs56973150	0.98[EUR][1000 genomes]
rs57330513	0.98[EUR][1000 genomes]
rs57492451	0.87[EUR][1000 genomes]
rs57636521	0.89[EUR][1000 genomes]
rs58755000	0.87[EUR][1000 genomes]
rs59158919	0.87[EUR][1000 genomes]
rs59249605	0.98[EUR][1000 genomes]
rs59359577	0.82[EUR][1000 genomes]
rs59518134	0.87[EUR][1000 genomes]
rs59650719	0.98[EUR][1000 genomes]
rs59972955	0.98[EUR][1000 genomes]
rs59978955	0.91[EUR][1000 genomes]
rs60015864	0.87[EUR][1000 genomes]
rs60494596	0.87[EUR][1000 genomes]
rs60549862	0.84[EUR][1000 genomes]
rs60700110	0.98[EUR][1000 genomes]
rs61171154	0.98[EUR][1000 genomes]
rs6484694	0.96[EUR][1000 genomes]
rs7104352	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs7127581	0.95[EUR][1000 genomes]
rs73497030	0.93[EUR][1000 genomes]
rs73497035	0.93[EUR][1000 genomes]
rs73497050	0.95[EUR][1000 genomes]
rs73497064	0.95[EUR][1000 genomes]
rs73500434	0.89[EUR][1000 genomes]
rs73501009	0.96[EUR][1000 genomes]
rs73501017	0.98[EUR][1000 genomes]
rs73501018	0.98[EUR][1000 genomes]
rs73501023	0.98[EUR][1000 genomes]
rs73501037	0.87[EUR][1000 genomes]
rs73501038	0.86[EUR][1000 genomes]
rs73501048	0.89[EUR][1000 genomes]
rs73501059	0.87[EUR][1000 genomes]
rs73501064	0.89[EUR][1000 genomes]
rs73501065	0.89[EUR][1000 genomes]
rs73501069	0.87[EUR][1000 genomes]
rs73501097	0.89[EUR][1000 genomes]
rs7483997	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7925527	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7933297	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7944654	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7951527	1.00[CEU][hapmap]
rs8191	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs958332	0.90[CEU][hapmap];0.95[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
2	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
4	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:34089600-34104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:34090000-34097800	Weak transcription	Pancreas	Pancrea
12	chr11:34090000-34100400	Weak transcription	Psoas Muscle	Psoas
13	chr11:34090000-34100600	Weak transcription	Right Ventricle	heart
14	chr11:34090400-34102000	Weak transcription	Fetal Heart	heart
15	chr11:34091000-34123400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr11:34091000-34123400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:34091200-34123600	Strong transcription	Dnd41	blood
18	chr11:34091600-34123800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:34091600-34124200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr11:34091800-34102600	Strong transcription	K562	blood
21	chr11:34091800-34123400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:34091800-34124200	Strong transcription	Fetal Thymus	thymus
23	chr11:34091800-34124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:34091800-34124800	Strong transcription	Fetal Intestine Large	intestine
25	chr11:34092000-34119800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:34092200-34098800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:34092600-34102400	Strong transcription	Fetal Kidney	kidney
28	chr11:34092600-34106600	Strong transcription	Primary hematopoietic stem cells	blood
29	chr11:34092600-34110600	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:34092600-34122200	Strong transcription	Fetal Brain Female	brain
31	chr11:34092600-34123000	Strong transcription	GM12878-XiMat	blood
32	chr11:34092600-34123400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:34092600-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:34092600-34125000	Strong transcription	Liver	Liver
35	chr11:34093000-34099200	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr11:34093000-34110600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:34093000-34122400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:34093200-34098600	Strong transcription	Thymus	Thymus
39	chr11:34093200-34107000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr11:34093200-34122400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:34093200-34123200	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr11:34093200-34123400	Strong transcription	Placenta	Placenta
43	chr11:34093400-34102400	Strong transcription	Primary B cells from cord blood	blood
44	chr11:34093400-34107600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:34093400-34122400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:34093400-34123000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr11:34093400-34124000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:34093600-34098600	Strong transcription	Fetal Muscle Leg	muscle
49	chr11:34093600-34098600	Strong transcription	Left Ventricle	heart
50	chr11:34093600-34104000	Strong transcription	HepG2	liver

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