Variant report

Variant	rs28768368
Chromosome Location	chr11:34048748-34048749
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34047888..34049807-chr11:34058557..34060291,2	K562	blood:
2	chr11:34040788..34042322-chr11:34047509..34050356,2	K562	blood:
3	chr11:34048725..34050280-chr11:34056385..34058046,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10501132	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10836150	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925114	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925115	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925121	0.84[AMR][1000 genomes]
rs16925126	0.84[AMR][1000 genomes]
rs16925134	0.84[AMR][1000 genomes]
rs16925147	0.84[AMR][1000 genomes]
rs16925155	0.84[AMR][1000 genomes]
rs16926099	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17699090	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17699505	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17699517	0.84[AMR][1000 genomes]
rs17699883	0.85[AFR][1000 genomes]
rs17700132	0.82[AFR][1000 genomes]
rs17700714	0.82[AFR][1000 genomes]
rs17771981	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17777885	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17778759	0.82[AFR][1000 genomes]
rs2004272	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2421456	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2421457	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2421459	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36117528	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4074368	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4756095	0.86[EUR][1000 genomes]
rs4756096	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4756101	0.82[EUR][1000 genomes]
rs56696374	0.84[AMR][1000 genomes]
rs56973150	0.84[AMR][1000 genomes]
rs57330513	0.84[AMR][1000 genomes]
rs57636521	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59249605	0.84[AMR][1000 genomes]
rs59359577	0.82[AFR][1000 genomes]
rs59650719	0.84[AMR][1000 genomes]
rs59972955	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs60700110	0.84[AMR][1000 genomes]
rs61171154	0.84[AMR][1000 genomes]
rs6484694	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7104352	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7112219	0.86[EUR][1000 genomes]
rs7112450	0.86[EUR][1000 genomes]
rs7122992	0.86[EUR][1000 genomes]
rs7127581	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73497030	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73497035	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73497050	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73497064	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501009	0.84[AMR][1000 genomes]
rs73501017	0.84[AMR][1000 genomes]
rs73501018	0.84[AMR][1000 genomes]
rs73501023	0.84[AMR][1000 genomes]
rs7483997	0.84[AMR][1000 genomes]
rs7940096	0.84[EUR][1000 genomes]
rs958332	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3399258	chr11:34046901-34049749	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3438684	chr11:34047026-34049824	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3420049	chr11:34047526-34049324	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3502318	chr11:34048450-34048911	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3477953	chr11:34048485-34048872	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3427216	chr11:34048486-34048896	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv5117	chr11:34048504-34048850	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3432667	chr11:34048537-34048849	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3384101	chr11:34048557-34048819	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3477964	chr11:34048598-34048804	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3502320	chr11:34048598-34048804	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34041400-34048800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34046600-34049400	Weak transcription	Aorta	Aorta
3	chr11:34047600-34048800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:34047800-34048800	Weak transcription	Liver	Liver

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