Variant report

Variant	rs16925424
Chromosome Location	chr8:60836793-60836794
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10504305	1.00[EUR][1000 genomes]
rs10957116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10957117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1497033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497040	1.00[EUR][1000 genomes]
rs16925436	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16925438	1.00[ASN][1000 genomes]
rs16925439	1.00[ASN][1000 genomes]
rs16925446	1.00[ASN][1000 genomes]
rs16925448	1.00[ASN][1000 genomes]
rs16925476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16925486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16925547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60430945	0.96[ASN][1000 genomes]
rs62510039	1.00[ASN][1000 genomes]
rs62511073	1.00[ASN][1000 genomes]
rs62511074	1.00[ASN][1000 genomes]
rs62511075	1.00[ASN][1000 genomes]
rs6985296	1.00[ASN][1000 genomes]
rs6986157	0.98[ASN][1000 genomes]
rs7002513	1.00[ASN][1000 genomes]
rs7002780	1.00[ASN][1000 genomes]
rs7003409	1.00[ASN][1000 genomes]
rs7003592	1.00[ASN][1000 genomes]
rs7007065	0.98[ASN][1000 genomes]
rs7007191	0.98[ASN][1000 genomes]
rs7816800	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7823305	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7823331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827640	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7827750	0.98[ASN][1000 genomes]
rs7827752	0.98[ASN][1000 genomes]
rs7838048	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60835000-60844600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:60836000-60843200	Weak transcription	Colon Smooth Muscle	Colon

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