Variant report

Variant	rs16925486
Chromosome Location	chr8:60872218-60872219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10504305	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10957116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1497034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1497040	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16925424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16925436	0.88[ASN][1000 genomes]
rs16925438	0.88[ASN][1000 genomes]
rs16925439	0.88[ASN][1000 genomes]
rs16925446	0.88[ASN][1000 genomes]
rs16925448	0.88[ASN][1000 genomes]
rs16925476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16925485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925547	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16925573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16925576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16925579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16925595	0.89[JPT][hapmap]
rs16925596	0.90[JPT][hapmap]
rs2088344	0.90[JPT][hapmap]
rs2088345	0.89[JPT][hapmap]
rs60430945	0.85[ASN][1000 genomes]
rs62510039	0.88[ASN][1000 genomes]
rs62511073	0.88[ASN][1000 genomes]
rs62511074	0.88[ASN][1000 genomes]
rs62511075	0.88[ASN][1000 genomes]
rs6985296	0.88[ASN][1000 genomes]
rs6986157	0.90[ASN][1000 genomes]
rs7002513	0.88[ASN][1000 genomes]
rs7002780	0.88[ASN][1000 genomes]
rs7003409	0.88[ASN][1000 genomes]
rs7003592	0.88[ASN][1000 genomes]
rs7007065	0.90[ASN][1000 genomes]
rs7007191	0.90[ASN][1000 genomes]
rs7816800	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7823305	0.88[ASN][1000 genomes]
rs7823331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7827378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7827640	0.88[ASN][1000 genomes]
rs7827750	0.90[ASN][1000 genomes]
rs7827752	0.90[ASN][1000 genomes]
rs7838048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60871600-60884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60872000-60873200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:60872200-60872800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr8:60872200-60872800	Enhancers	HUES48 Cell Line	embryonic stem cell

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