Variant report

Variant	rs16925869
Chromosome Location	chr11:34634659-34634660
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34622016..34626475-chr11:34634436..34638216,4	K562	blood:
2	chr11:34630414..34634068-chr11:34634518..34638275,4	K562	blood:
3	chr11:34626866..34628480-chr11:34633656..34636586,2	K562	blood:
4	chr11:34630477..34632463-chr11:34633814..34636376,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11032789	0.85[JPT][hapmap]
rs12286877	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12286924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1377496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs16925929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs286946	1.00[EUR][1000 genomes]
rs286949	1.00[EUR][1000 genomes]
rs286950	1.00[EUR][1000 genomes]
rs286952	1.00[EUR][1000 genomes]
rs7122724	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7481024	0.84[ASN][1000 genomes]
rs7483761	1.00[CEU][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34625400-34642800	Weak transcription	Gastric	stomach
3	chr11:34628200-34635400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
5	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach
6	chr11:34631200-34636200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:34631400-34635800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:34631600-34635400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:34631800-34635600	Weak transcription	Fetal Intestine Large	intestine
10	chr11:34631800-34636000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:34632000-34636200	Weak transcription	K562	blood
12	chr11:34633800-34635200	Enhancers	Pancreas	Pancrea
13	chr11:34634000-34637400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:34634000-34643200	Weak transcription	Lung	lung
15	chr11:34634200-34635000	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:34634200-34636600	Enhancers	Adipose Nuclei	Adipose
17	chr11:34634200-34636600	Enhancers	HepG2	liver
18	chr11:34634200-34636800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:34634400-34634800	Enhancers	Liver	Liver
20	chr11:34634400-34634800	Weak transcription	Fetal Heart	heart
21	chr11:34634400-34635000	Enhancers	GM12878-XiMat	blood
22	chr11:34634400-34635800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:34634400-34637600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:34634600-34634800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:34634600-34635000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:34634600-34635000	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr11:34634600-34635200	Enhancers	Esophagus	oesophagus
28	chr11:34634600-34635400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:34634600-34635800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr11:34634600-34636000	Enhancers	A549	lung
31	chr11:34634600-34636400	Enhancers	NHDF-Ad	bronchial
32	chr11:34634600-34636600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:34634600-34636600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr11:34634600-34637200	Enhancers	Primary B cells from peripheral blood	blood

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