Variant report

Variant	rs286950
Chromosome Location	chr11:34624796-34624797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34624693..34626791-chr11:34672431..34674013,2	K562	blood:
2	chr11:34622016..34626475-chr11:34634436..34638216,4	K562	blood:
3	chr11:34623436..34625468-chr11:34629882..34632091,2	MCF-7	breast:
4	chr11:34596450..34598657-chr11:34624688..34627095,2	K562	blood:
5	chr11:34624747..34628551-chr11:34657820..34660941,3	K562	blood:
6	chr11:34623810..34626247-chr11:34658951..34660726,2	K562	blood:
7	chr11:34623825..34626505-chr11:34860564..34863481,2	K562	blood:
8	chr11:34616542..34620453-chr11:34622551..34624914,3	K562	blood:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1377497	0.80[AMR][1000 genomes]
rs16925869	1.00[EUR][1000 genomes]
rs286946	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55815243	0.80[AMR][1000 genomes]
rs56267737	0.80[AMR][1000 genomes]
rs58418741	0.80[AMR][1000 genomes]
rs59692197	0.80[AMR][1000 genomes]
rs60079521	0.80[AMR][1000 genomes]
rs60324781	0.80[AMR][1000 genomes]
rs7122724	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34620000-34626600	Enhancers	NHEK	skin
3	chr11:34620600-34628400	Enhancers	Fetal Intestine Small	intestine
4	chr11:34620600-34628600	Enhancers	Fetal Intestine Large	intestine
5	chr11:34620800-34625800	Enhancers	Pancreas	Pancrea
6	chr11:34621800-34626600	Weak transcription	Small Intestine	intestine
7	chr11:34622600-34626000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:34622600-34626600	Weak transcription	HMEC	breast
9	chr11:34622800-34627200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:34623000-34624800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:34623000-34625600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:34623000-34627000	Enhancers	Stomach Mucosa	stomach
13	chr11:34623000-34627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:34623000-34627600	Weak transcription	Esophagus	oesophagus
15	chr11:34623000-34628000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:34623200-34625200	Weak transcription	Placenta	Placenta
17	chr11:34623200-34626600	Weak transcription	HSMMtube	muscle
18	chr11:34623200-34627200	Weak transcription	NHLF	lung
19	chr11:34623400-34628600	Enhancers	A549	lung
20	chr11:34623400-34628600	Enhancers	HepG2	liver
21	chr11:34623400-34631200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:34624000-34624800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr11:34624000-34625200	Weak transcription	Fetal Lung	lung
24	chr11:34624200-34624800	Enhancers	Colonic Mucosa	Colon
25	chr11:34624200-34624800	Enhancers	Gastric	stomach
26	chr11:34624200-34633800	Weak transcription	Lung	lung
27	chr11:34624400-34624800	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr11:34624400-34625400	Flanking Active TSS	K562	blood
29	chr11:34624600-34625000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:34624600-34625000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr11:34624600-34625200	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr11:34624600-34628400	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links