Variant report

Variant	rs7122724
Chromosome Location	chr11:34631659-34631660
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34619511..34621145-chr11:34630606..34632621,2	K562	blood:
2	chr11:34630477..34632463-chr11:34633814..34636376,2	K562	blood:
3	chr11:34621233..34623041-chr11:34631125..34633370,2	K562	blood:
4	chr11:34631321..34633307-chr11:34669575..34672100,2	K562	blood:
5	chr11:34630414..34634068-chr11:34634518..34638275,4	K562	blood:
6	chr11:34621045..34623041-chr11:34631011..34633370,3	K562	blood:
7	chr11:34630893..34631873-chr5:149379885..149380801,2	NB4	blood:
8	chr11:34626946..34629692-chr11:34630243..34633645,4	MCF-7	breast:
9	chr11:34623436..34625468-chr11:34629882..34632091,2	MCF-7	breast:
10	chr11:34631109..34633523-chr11:34830130..34832941,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164296	Chromatin interaction
ENSG00000113716	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12286924	1.00[CEU][hapmap]
rs1377496	1.00[CEU][hapmap]
rs1377497	0.85[AMR][1000 genomes]
rs16925869	1.00[EUR][1000 genomes]
rs16925929	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs286946	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286949	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286950	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286952	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55815243	0.85[AMR][1000 genomes]
rs56267737	0.85[AMR][1000 genomes]
rs58418741	0.85[AMR][1000 genomes]
rs58684591	0.82[AMR][1000 genomes]
rs59692197	0.85[AMR][1000 genomes]
rs60079521	0.85[AMR][1000 genomes]
rs60324781	0.85[AMR][1000 genomes]
rs7483761	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv526845	chr11:34625239-34632772	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34624200-34633800	Weak transcription	Lung	lung
3	chr11:34625400-34642800	Weak transcription	Gastric	stomach
4	chr11:34628200-34635400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:34628400-34634600	Weak transcription	Esophagus	oesophagus
6	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
7	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach
8	chr11:34630000-34631800	Enhancers	HepG2	liver
9	chr11:34630600-34632000	Enhancers	A549	lung
10	chr11:34630800-34632200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr11:34631000-34631800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:34631000-34631800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:34631000-34632200	Enhancers	NHEK	skin
14	chr11:34631200-34631800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:34631200-34631800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:34631200-34636200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:34631400-34631800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:34631400-34631800	Enhancers	Fetal Intestine Large	intestine
19	chr11:34631400-34631800	Enhancers	Pancreas	Pancrea
20	chr11:34631400-34632000	Enhancers	K562	blood
21	chr11:34631400-34635800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:34631600-34631800	Enhancers	HSMMtube	muscle
23	chr11:34631600-34632200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr11:34631600-34634200	Weak transcription	Fetal Heart	heart
25	chr11:34631600-34635400	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links