Variant report

Variant	rs58684591
Chromosome Location	chr11:34617728-34617729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1377497	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551291	0.94[AMR][1000 genomes]
rs55815243	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56267737	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58418741	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59692197	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60079521	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60324781	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122724	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897212	chr11:34523173-34621004	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34618400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34609600-34619200	Weak transcription	Fetal Heart	heart
4	chr11:34609600-34620800	Weak transcription	Esophagus	oesophagus
5	chr11:34615600-34620800	Weak transcription	Right Atrium	heart
6	chr11:34616800-34620600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:34617000-34619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:34617200-34618200	Weak transcription	Stomach Mucosa	stomach
9	chr11:34617200-34618200	Weak transcription	HepG2	liver
10	chr11:34617200-34619800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:34617200-34620800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:34617200-34620800	Weak transcription	Pancreas	Pancrea
13	chr11:34617400-34620000	Weak transcription	NHEK	skin
14	chr11:34617600-34618000	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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