Variant report

Variant	rs16926832
Chromosome Location	chr11:35110536-35110537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35110163..35112423-chr11:35159701..35161676,2	MCF-7	breast:
2	chr11:35109556..35112078-chr11:35117913..35120120,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000026508	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1425800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926815	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926825	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553819	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785183	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs353598	1.00[EUR][1000 genomes]
rs416285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73441065	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv975326	chr11:35103908-35125981	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35103200-35110600	Enhancers	Fetal Muscle Leg	muscle
2	chr11:35105000-35111000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:35105400-35111800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:35105400-35112400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:35105400-35112800	Enhancers	Primary T cells from cord blood	blood
6	chr11:35105600-35110800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:35105800-35112000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:35106000-35110600	Enhancers	Colon Smooth Muscle	Colon
9	chr11:35107200-35110600	Enhancers	Fetal Stomach	stomach
10	chr11:35108400-35112600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:35108800-35110600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:35108800-35110600	Enhancers	HSMM	muscle
13	chr11:35108800-35110800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:35108800-35111400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:35108800-35111400	Enhancers	Adipose Nuclei	Adipose
16	chr11:35109000-35110600	Enhancers	Osteobl	bone
17	chr11:35109000-35111000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr11:35109000-35111000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr11:35109000-35111000	Enhancers	Placenta	Placenta
20	chr11:35109000-35111000	Enhancers	Pancreas	Pancrea
21	chr11:35109000-35111600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:35109000-35112600	Enhancers	Primary B cells from cord blood	blood
23	chr11:35109000-35113000	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:35109200-35110600	Enhancers	Right Atrium	heart
25	chr11:35109200-35110600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:35109200-35110600	Enhancers	Hela-S3	cervix
27	chr11:35109200-35110800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:35109200-35110800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:35109200-35111000	Enhancers	Aorta	Aorta
30	chr11:35109200-35111200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr11:35109200-35111400	Enhancers	Spleen	Spleen
32	chr11:35109400-35111200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:35109800-35113400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr11:35110000-35110800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:35110000-35110800	Flanking Active TSS	HMEC	breast
36	chr11:35110200-35110600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:35110200-35110600	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:35110200-35111200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr11:35110200-35111400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:35110200-35112400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:35110200-35112600	Weak transcription	Fetal Thymus	thymus
42	chr11:35110400-35110600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr11:35110400-35110600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:35110400-35110600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr11:35110400-35110800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:35110400-35110800	Enhancers	GM12878-XiMat	blood
47	chr11:35110400-35111200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr11:35110400-35111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:35110400-35111600	Enhancers	NHEK	skin
50	chr11:35110400-35124000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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