Variant report

Variant	rs439669
Chromosome Location	chr11:35106985-35106986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1425800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553819	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785183	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs353598	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs416285	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105189	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73441065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv975326	chr11:35103908-35125981	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35103200-35107800	Enhancers	Adipose Nuclei	Adipose
2	chr11:35103200-35110600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:35103600-35108400	Enhancers	Fetal Muscle Trunk	muscle
4	chr11:35104000-35110400	Enhancers	Psoas Muscle	Psoas
5	chr11:35104400-35107800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:35104400-35108800	Weak transcription	HUVEC	blood vessel
7	chr11:35104600-35110000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:35104800-35109200	Weak transcription	Aorta	Aorta
9	chr11:35104800-35109200	Weak transcription	Spleen	Spleen
10	chr11:35105000-35107800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:35105000-35111000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:35105200-35107800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:35105200-35108000	Enhancers	NHDF-Ad	bronchial
14	chr11:35105200-35109200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:35105200-35109200	Weak transcription	Right Ventricle	heart
16	chr11:35105200-35109800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:35105200-35110000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:35105400-35107600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr11:35105400-35107800	Enhancers	NHEK	skin
20	chr11:35105400-35108000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr11:35105400-35108000	Enhancers	Hela-S3	cervix
22	chr11:35105400-35109000	Weak transcription	Pancreas	Pancrea
23	chr11:35105400-35109200	Weak transcription	Lung	lung
24	chr11:35105400-35109400	Enhancers	Rectal Smooth Muscle	rectum
25	chr11:35105400-35111800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr11:35105400-35112400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:35105400-35112800	Enhancers	Primary T cells from cord blood	blood
28	chr11:35105600-35109000	Weak transcription	Placenta	Placenta
29	chr11:35105600-35109200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:35105600-35109200	Weak transcription	Stomach Mucosa	stomach
31	chr11:35105600-35109400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:35105600-35109800	Weak transcription	Brain Anterior Caudate	brain
33	chr11:35105600-35110800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:35105800-35107600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:35105800-35108200	Enhancers	Stomach Smooth Muscle	stomach
36	chr11:35105800-35109200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:35105800-35112000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr11:35106000-35109000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:35106000-35109200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:35106000-35109400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr11:35106000-35109600	Weak transcription	Fetal Brain Male	brain
42	chr11:35106000-35110600	Enhancers	Colon Smooth Muscle	Colon
43	chr11:35106200-35107000	Enhancers	Esophagus	oesophagus
44	chr11:35106200-35107200	Weak transcription	Fetal Stomach	stomach
45	chr11:35106200-35107600	Weak transcription	Small Intestine	intestine
46	chr11:35106200-35108800	Weak transcription	HSMMtube	muscle
47	chr11:35106200-35109000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:35106200-35109000	Weak transcription	Primary B cells from cord blood	blood
49	chr11:35106200-35109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:35106200-35109000	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links