Variant report

Variant	rs169328
Chromosome Location	chr15:40150301-40150302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11070235	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1166729	0.90[ASN][1000 genomes]
rs11854663	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11855441	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12442442	0.92[ASN][1000 genomes]
rs12901508	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1436274	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs166703	0.94[ASN][1000 genomes]
rs1865754	0.96[CHD][hapmap];0.82[JPT][hapmap]
rs275747	0.84[ASN][1000 genomes]
rs3784392	0.96[CHD][hapmap];0.82[JPT][hapmap]
rs4923842	0.92[ASN][1000 genomes]
rs4923843	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924393	0.90[ASN][1000 genomes]
rs4924394	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62002492	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62002493	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7164392	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7181712	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8027339	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
2	chr15:40138400-40162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:40144200-40152600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:40145800-40152000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:40146600-40153800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:40146800-40154200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:40147000-40150400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:40147000-40150800	Weak transcription	HMEC	breast
9	chr15:40147400-40167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:40148200-40152400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:40148200-40162000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:40148200-40162000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:40148400-40152400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:40148400-40162200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:40148400-40162200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:40148600-40154000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:40148800-40151600	Weak transcription	NHDF-Ad	bronchial
18	chr15:40148800-40152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:40148800-40152400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:40148800-40152600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr15:40148800-40159400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:40149000-40152800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:40149400-40150400	Enhancers	HUVEC	blood vessel
24	chr15:40149400-40151600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:40149400-40152600	Weak transcription	NHLF	lung
26	chr15:40149400-40160400	Weak transcription	HSMM	muscle
27	chr15:40149600-40152400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:40149600-40152400	Weak transcription	Osteobl	bone
29	chr15:40149800-40152400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:40150000-40171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:40150200-40150800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links