Variant report

Variant	rs11855441
Chromosome Location	chr15:40136928-40136929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11070235	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1166729	0.96[ASN][1000 genomes]
rs11854663	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438821	0.87[ASN][1000 genomes]
rs12442442	1.00[ASN][1000 genomes]
rs12901508	0.89[ASN][1000 genomes]
rs1436274	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs166703	0.89[ASN][1000 genomes]
rs169328	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1836850	0.86[ASN][1000 genomes]
rs1865754	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs275747	0.80[ASN][1000 genomes]
rs28565083	0.87[ASN][1000 genomes]
rs35194933	0.87[ASN][1000 genomes]
rs3784392	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4923842	1.00[ASN][1000 genomes]
rs4923843	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924393	0.98[ASN][1000 genomes]
rs4924394	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62002492	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62002493	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7164392	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7181712	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40121600-40137200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:40123400-40143200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
4	chr15:40123800-40143600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:40124200-40138200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:40124400-40137000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:40126400-40142600	Weak transcription	NHLF	lung
8	chr15:40126600-40138000	Weak transcription	Osteobl	bone
9	chr15:40127000-40138200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:40127200-40142600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:40129800-40138200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:40133400-40142400	Weak transcription	HSMM	muscle
13	chr15:40135200-40138000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:40135200-40142800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:40135400-40139400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:40135600-40139200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:40136600-40137800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:40136800-40138400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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