Variant report

Variant	rs12442442
Chromosome Location	chr15:40127028-40127029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10520144	1.00[CEU][hapmap]
rs11070235	0.99[ASN][1000 genomes]
rs1166729	0.96[ASN][1000 genomes]
rs11854663	1.00[ASN][1000 genomes]
rs11855441	1.00[ASN][1000 genomes]
rs12438821	0.87[ASN][1000 genomes]
rs12901508	0.89[ASN][1000 genomes]
rs1436274	0.99[ASN][1000 genomes]
rs166703	0.89[ASN][1000 genomes]
rs169328	0.92[ASN][1000 genomes]
rs16969789	1.00[CEU][hapmap]
rs1836850	0.86[ASN][1000 genomes]
rs1865754	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs275747	0.80[ASN][1000 genomes]
rs28565083	0.87[ASN][1000 genomes]
rs35194933	0.87[ASN][1000 genomes]
rs3784392	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4923842	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923843	1.00[ASN][1000 genomes]
rs4924383	1.00[CEU][hapmap]
rs4924393	0.98[ASN][1000 genomes]
rs4924394	1.00[ASN][1000 genomes]
rs59434895	1.00[AFR][1000 genomes]
rs60431166	1.00[AFR][1000 genomes]
rs61695850	1.00[AFR][1000 genomes]
rs62002492	0.99[ASN][1000 genomes]
rs62002493	0.99[ASN][1000 genomes]
rs7164392	0.89[ASN][1000 genomes]
rs7181712	1.00[ASN][1000 genomes]
rs8032864	1.00[CEU][hapmap]
rs8035291	1.00[CEU][hapmap]
rs8035986	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40110400-40129800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:40120800-40128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:40121600-40128000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:40121600-40128000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:40121600-40128400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:40121600-40137200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:40123400-40143200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
9	chr15:40123800-40128000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:40123800-40143600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:40124200-40138200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:40124400-40137000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:40126200-40127400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:40126200-40127400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:40126200-40127800	Weak transcription	HUVEC	blood vessel
16	chr15:40126200-40133800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:40126400-40127200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:40126400-40127800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:40126400-40127800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:40126400-40128000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:40126400-40128800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:40126400-40129400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:40126400-40133000	Weak transcription	HSMM	muscle
24	chr15:40126400-40134600	Weak transcription	HMEC	breast
25	chr15:40126400-40142600	Weak transcription	NHLF	lung
26	chr15:40126600-40129800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:40126600-40130200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:40126600-40138000	Weak transcription	Osteobl	bone
29	chr15:40126800-40128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:40126800-40134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:40127000-40128400	Weak transcription	NHDF-Ad	bronchial
32	chr15:40127000-40138200	Weak transcription	Muscle Satellite Cultured Cells	--

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