Variant report

Variant	rs35194933
Chromosome Location	chr15:40124730-40124731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40122057..40123923-chr15:40124019..40125943,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11070235	0.86[ASN][1000 genomes]
rs1166729	0.88[ASN][1000 genomes]
rs11854663	0.87[ASN][1000 genomes]
rs11855441	0.87[ASN][1000 genomes]
rs12438821	0.95[ASN][1000 genomes]
rs12442442	0.87[ASN][1000 genomes]
rs1436274	0.86[ASN][1000 genomes]
rs1836850	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1865754	0.95[ASN][1000 genomes]
rs275754	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28565083	0.95[ASN][1000 genomes]
rs3784392	0.95[ASN][1000 genomes]
rs4923842	0.87[ASN][1000 genomes]
rs4923843	0.87[ASN][1000 genomes]
rs4924393	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4924394	0.87[ASN][1000 genomes]
rs62002492	0.86[ASN][1000 genomes]
rs62002493	0.86[ASN][1000 genomes]
rs7181712	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40110400-40129800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:40116800-40125600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:40120800-40125200	Weak transcription	HSMMtube	muscle
4	chr15:40120800-40125600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:40120800-40128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:40121200-40125800	Weak transcription	Adipose Nuclei	Adipose
7	chr15:40121400-40125200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:40121400-40125200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:40121600-40125200	Weak transcription	HSMM	muscle
10	chr15:40121600-40125200	Weak transcription	NH-A	brain
11	chr15:40121600-40125800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:40121600-40128000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:40121600-40128000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:40121600-40128400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:40121600-40137200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:40121800-40124800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:40122000-40125600	Weak transcription	HUVEC	blood vessel
18	chr15:40122400-40126000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:40122800-40124800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:40122800-40124800	Weak transcription	Osteobl	bone
21	chr15:40122800-40125800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:40123000-40125800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:40123200-40125200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:40123400-40143200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:40123600-40124800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:40123600-40124800	Weak transcription	NHDF-Ad	bronchial
27	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
28	chr15:40123800-40125200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:40123800-40126000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:40123800-40128000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:40123800-40143600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:40124200-40138200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:40124400-40137000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:40124600-40126000	Enhancers	NHLF	lung

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