Variant report

Variant	rs16934273
Chromosome Location	chr9:16218382-16218383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr9:16217836-16218930	SK-N-SH	brain:	n/a	chr9:16218175-16218185

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16207216..16210158-chr9:16217890..16219835,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf93-8	chr9:16216806-16219226	NONHSAT130285

Variant related genes	Relation type
C9orf92	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16934274	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs16934286	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16934287	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4410996	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4961468	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4961469	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4961673	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961674	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4961675	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4961676	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4961677	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4961678	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4961679	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56119294	0.82[ASN][1000 genomes]
rs57847950	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58214307	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs60295056	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73425617	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73425648	0.88[AFR][1000 genomes]
rs9406590	0.93[ASN][1000 genomes]
rs9406593	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9406594	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9406595	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9406596	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9407720	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9407721	0.93[ASN][1000 genomes]
rs9407722	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9407725	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9407726	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9407728	0.85[ASN][1000 genomes]
rs9407729	0.85[ASN][1000 genomes]
rs9407730	0.82[ASN][1000 genomes]
rs9407732	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16215000-16223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16215400-16218400	Weak transcription	HSMMtube	muscle
3	chr9:16215400-16218400	Weak transcription	NHLF	lung
4	chr9:16215400-16220800	Weak transcription	Adipose Nuclei	Adipose
5	chr9:16215400-16222000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:16215600-16218400	Weak transcription	Aorta	Aorta
7	chr9:16215600-16221200	Weak transcription	Fetal Kidney	kidney
8	chr9:16215800-16221400	Weak transcription	Right Atrium	heart
9	chr9:16217000-16221200	Weak transcription	Fetal Lung	lung
10	chr9:16217000-16221200	Weak transcription	Ovary	ovary
11	chr9:16217200-16221400	Weak transcription	A549	lung
12	chr9:16217600-16218800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:16217800-16218400	Enhancers	Colon Smooth Muscle	Colon
14	chr9:16217800-16218600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:16217800-16218800	Enhancers	HSMM	muscle
16	chr9:16217800-16219200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:16217800-16219200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:16217800-16219200	Enhancers	NH-A	brain
19	chr9:16217800-16219200	Enhancers	Osteobl	bone
20	chr9:16218000-16218600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:16218000-16218600	Enhancers	Lung	lung
22	chr9:16218000-16218800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:16218000-16219000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:16218000-16221400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:16218000-16222600	Enhancers	NHDF-Ad	bronchial
26	chr9:16218200-16218400	Enhancers	Fetal Muscle Trunk	muscle
27	chr9:16218200-16218400	Enhancers	Fetal Stomach	stomach
28	chr9:16218200-16218600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:16218200-16218600	Enhancers	Fetal Muscle Leg	muscle
30	chr9:16218200-16218600	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr9:16218200-16219000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:16218200-16219000	Enhancers	Placenta Amnion	Placenta Amnion

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