Variant report
Variant | rs9407732 |
---|---|
Chromosome Location | chr9:16232069-16232070 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:16201134..16203881-chr9:16231710..16234448,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16934273 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
rs16934274 | 0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs16934286 | 0.97[ASN][1000 genomes] |
rs16934287 | 0.97[ASN][1000 genomes] |
rs4410996 | 0.83[ASN][1000 genomes] |
rs4961468 | 0.91[ASN][1000 genomes] |
rs4961469 | 0.97[ASN][1000 genomes] |
rs4961471 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4961673 | 0.88[ASN][1000 genomes] |
rs4961674 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4961675 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4961676 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4961677 | 0.86[ASN][1000 genomes] |
rs4961678 | 0.91[ASN][1000 genomes] |
rs4961679 | 0.97[ASN][1000 genomes] |
rs4961680 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4961681 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs56119294 | 0.96[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs57847950 | 0.97[ASN][1000 genomes] |
rs58214307 | 0.88[ASN][1000 genomes] |
rs60295056 | 0.85[ASN][1000 genomes] |
rs73425617 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9406590 | 0.85[ASN][1000 genomes] |
rs9406593 | 0.83[ASN][1000 genomes] |
rs9406594 | 0.88[ASN][1000 genomes] |
rs9406595 | 0.88[ASN][1000 genomes] |
rs9406596 | 0.88[ASN][1000 genomes] |
rs9407720 | 0.88[ASN][1000 genomes] |
rs9407721 | 0.85[ASN][1000 genomes] |
rs9407722 | 0.85[ASN][1000 genomes] |
rs9407725 | 0.83[ASN][1000 genomes] |
rs9407726 | 0.83[ASN][1000 genomes] |
rs9407728 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9407729 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9407730 | 0.98[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs9802651 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9802678 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949463 | chr9:15970668-16377360 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv429999 | chr9:16102066-16389100 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv892639 | chr9:16190403-16242088 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv892640 | chr9:16206695-16260837 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv892641 | chr9:16218659-16242088 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:16218600-16233600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr9:16229000-16233600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |