Variant report

Variant	rs9407720
Chromosome Location	chr9:16221807-16221808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16934273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16934274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs16934286	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16934287	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4410996	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4961468	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4961469	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4961673	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961674	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4961675	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4961676	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4961677	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4961678	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4961679	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56119294	0.85[ASN][1000 genomes]
rs57847950	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58214307	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60295056	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73425617	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73425648	0.88[AFR][1000 genomes]
rs9406590	0.97[ASN][1000 genomes]
rs9406593	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9406594	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9406595	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9406596	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9407721	0.97[ASN][1000 genomes]
rs9407722	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9407725	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9407726	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9407728	0.88[ASN][1000 genomes]
rs9407729	0.88[ASN][1000 genomes]
rs9407730	0.85[ASN][1000 genomes]
rs9407732	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892641	chr9:16218659-16242088	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16215000-16223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16215400-16222000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:16218000-16222600	Enhancers	NHDF-Ad	bronchial
4	chr9:16218600-16223400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:16218600-16233600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:16219000-16223600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:16220800-16222400	Enhancers	Adipose Nuclei	Adipose
8	chr9:16221200-16222000	Enhancers	Ovary	ovary
9	chr9:16221200-16222200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:16221200-16222400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:16221200-16222400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:16221200-16222400	Enhancers	Fetal Kidney	kidney
13	chr9:16221200-16222400	Enhancers	Fetal Lung	lung
14	chr9:16221200-16222600	Enhancers	Osteobl	bone
15	chr9:16221200-16223200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:16221200-16223400	Enhancers	Hela-S3	cervix
17	chr9:16221200-16224000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:16221200-16224000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr9:16221200-16224200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:16221400-16222000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:16221400-16222400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr9:16221400-16222400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:16221400-16222400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:16221400-16222400	Enhancers	NHLF	lung
25	chr9:16221400-16222600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:16221400-16223200	Enhancers	A549	lung
27	chr9:16221400-16223800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:16221400-16223800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr9:16221600-16222600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr9:16221600-16222600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr9:16221600-16224200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr9:16221600-16226800	Weak transcription	Right Atrium	heart
33	chr9:16221800-16222400	Enhancers	GM12878-XiMat	blood
34	chr9:16221800-16223600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:16221800-16223600	Weak transcription	Fetal Stomach	stomach
36	chr9:16221800-16224400	Enhancers	Fetal Intestine Small	intestine
37	chr9:16221800-16224400	Enhancers	Stomach Mucosa	stomach

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