Variant report

Variant	rs16934571
Chromosome Location	chr11:17673137-17673138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10741731	0.94[ASN][1000 genomes]
rs10766418	0.86[ASN][1000 genomes]
rs10766419	0.85[ASN][1000 genomes]
rs10832837	0.88[ASN][1000 genomes]
rs10832841	0.83[ASN][1000 genomes]
rs11024364	0.88[ASN][1000 genomes]
rs11024367	0.88[ASN][1000 genomes]
rs11024368	0.88[ASN][1000 genomes]
rs11024375	0.86[ASN][1000 genomes]
rs12575678	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12577406	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12785437	0.81[ASN][1000 genomes]
rs17558336	0.82[EUR][1000 genomes]
rs2878806	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs2878807	0.81[ASN][1000 genomes]
rs3858499	0.81[ASN][1000 genomes]
rs3858501	0.81[ASN][1000 genomes]
rs3858502	0.81[ASN][1000 genomes]
rs3901370	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs3935159	0.94[ASN][1000 genomes]
rs4141260	0.85[ASN][1000 genomes]
rs4141261	0.82[ASN][1000 genomes]
rs4756905	0.88[ASN][1000 genomes]
rs4756907	0.85[ASN][1000 genomes]
rs4757565	0.86[ASN][1000 genomes]
rs4757567	0.85[ASN][1000 genomes]
rs4757568	0.85[CHB][hapmap]
rs4757569	0.85[CHB][hapmap]
rs73420003	0.87[AMR][1000 genomes]
rs73420005	0.83[AMR][1000 genomes]
rs7395942	0.89[ASN][1000 genomes]
rs7483014	0.94[ASN][1000 genomes]
rs9633896	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv897024	chr11:17617468-17692011	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17670200-17675000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr11:17670400-17675600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:17670800-17675600	Enhancers	HSMMtube	muscle
4	chr11:17671600-17673600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:17672400-17673400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:17672400-17673400	Enhancers	Hela-S3	cervix
7	chr11:17672400-17673600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:17672400-17673600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr11:17672400-17675600	Bivalent Enhancer	Placenta	Placenta
10	chr11:17672400-17676000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:17672400-17676400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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