Variant report

Variant	rs3901370
Chromosome Location	chr11:17712075-17712076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17710093..17712652-chr11:17715299..17717332,2	K562	blood:
2	chr11:17705084..17707821-chr11:17711837..17714694,2	K562	blood:
3	chr11:17710440..17715421-chr11:17715832..17719362,5	K562	blood:

Variant related genes	Relation type
ENSG00000255335	Chromatin interaction
ENSG00000254586	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10766416	0.85[EUR][1000 genomes]
rs10766418	0.86[ASN][1000 genomes]
rs10766419	0.88[ASN][1000 genomes]
rs10766420	0.82[EUR][1000 genomes]
rs10766423	0.85[EUR][1000 genomes]
rs10832837	0.85[ASN][1000 genomes]
rs10832841	0.83[ASN][1000 genomes]
rs10832842	0.85[EUR][1000 genomes]
rs11024364	0.85[ASN][1000 genomes]
rs11024367	0.85[ASN][1000 genomes]
rs11024368	0.85[ASN][1000 genomes]
rs11024375	0.86[ASN][1000 genomes]
rs12785437	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934571	0.81[ASN][1000 genomes]
rs28609365	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28683112	0.95[ASN][1000 genomes]
rs2878806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878807	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858493	0.86[EUR][1000 genomes]
rs3858494	0.86[EUR][1000 genomes]
rs3858495	0.86[EUR][1000 genomes]
rs3858496	0.86[EUR][1000 genomes]
rs3858498	0.86[EUR][1000 genomes]
rs3858499	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858502	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858506	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs3858507	0.86[EUR][1000 genomes]
rs3928366	0.86[EUR][1000 genomes]
rs4141260	0.88[ASN][1000 genomes]
rs4141261	0.85[ASN][1000 genomes]
rs4756905	0.85[ASN][1000 genomes]
rs4756907	0.88[ASN][1000 genomes]
rs4756910	0.86[EUR][1000 genomes]
rs4756912	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs4757565	0.86[ASN][1000 genomes]
rs4757567	0.88[ASN][1000 genomes]
rs4757568	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs4757569	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs4757570	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs6416178	0.85[EUR][1000 genomes]
rs6486390	0.85[EUR][1000 genomes]
rs7106809	0.81[EUR][1000 genomes]
rs7109072	0.90[CEU][hapmap]
rs7123420	0.85[EUR][1000 genomes]
rs7128599	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7395942	0.83[ASN][1000 genomes]
rs7478812	0.82[EUR][1000 genomes]
rs7937727	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17707600-17712200	Enhancers	Fetal Muscle Leg	muscle
2	chr11:17710200-17713200	Weak transcription	Psoas Muscle	Psoas
3	chr11:17710800-17713200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:17710800-17713400	Weak transcription	HSMMtube	muscle
5	chr11:17711200-17714400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:17711400-17712600	Weak transcription	HSMM	muscle
7	chr11:17711600-17712800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:17711600-17713200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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