Variant report

Variant	rs6486390
Chromosome Location	chr11:17715619-17715620
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10766416	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766420	0.96[EUR][1000 genomes]
rs10832842	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832845	0.90[EUR][1000 genomes]
rs10832851	0.86[EUR][1000 genomes]
rs10832852	0.87[EUR][1000 genomes]
rs11024384	0.87[EUR][1000 genomes]
rs11603216	0.87[EUR][1000 genomes]
rs11603221	0.87[EUR][1000 genomes]
rs12575678	0.86[ASN][1000 genomes]
rs12785437	0.86[EUR][1000 genomes]
rs16934638	0.88[ASN][1000 genomes]
rs2336849	0.87[EUR][1000 genomes]
rs28609365	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878806	0.86[EUR][1000 genomes]
rs2878807	0.86[EUR][1000 genomes]
rs3858493	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3858494	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3858495	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3858496	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3858498	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3858499	0.85[EUR][1000 genomes]
rs3858501	0.86[EUR][1000 genomes]
rs3858502	0.86[EUR][1000 genomes]
rs3858508	0.91[EUR][1000 genomes]
rs3890009	0.87[EUR][1000 genomes]
rs3901226	0.86[EUR][1000 genomes]
rs3901370	0.85[EUR][1000 genomes]
rs3911833	0.85[EUR][1000 genomes]
rs3928366	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4083362	0.87[EUR][1000 genomes]
rs4141262	0.83[ASN][1000 genomes]
rs4756910	0.81[EUR][1000 genomes]
rs4756912	0.81[EUR][1000 genomes]
rs4757570	0.81[EUR][1000 genomes]
rs61880586	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6416178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67265917	0.86[ASN][1000 genomes]
rs7106809	0.95[EUR][1000 genomes]
rs7107526	0.82[EUR][1000 genomes]
rs7128599	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420003	0.83[ASN][1000 genomes]
rs73420005	0.86[ASN][1000 genomes]
rs7478812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930233	0.82[EUR][1000 genomes]
rs7937727	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17712800-17716000	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr11:17713200-17718000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:17713200-17721800	Enhancers	Psoas Muscle	Psoas
4	chr11:17713400-17717200	Enhancers	HSMMtube	muscle
5	chr11:17714400-17717000	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr11:17715200-17722000	Enhancers	HSMM	muscle

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