Variant report
| Variant | rs67265917 |
|---|---|
| Chromosome Location | chr11:17699373-17699374 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10766416 | 0.98[ASN][1000 genomes] |
| rs10832842 | 0.98[ASN][1000 genomes] |
| rs12575678 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12577406 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs16934638 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17558336 | 0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28609365 | 0.86[ASN][1000 genomes] |
| rs3858493 | 0.98[ASN][1000 genomes] |
| rs3858494 | 0.98[ASN][1000 genomes] |
| rs3858495 | 0.98[ASN][1000 genomes] |
| rs3858496 | 0.98[ASN][1000 genomes] |
| rs3858498 | 0.98[ASN][1000 genomes] |
| rs3928366 | 0.98[ASN][1000 genomes] |
| rs4141262 | 0.92[ASN][1000 genomes] |
| rs6416178 | 0.86[ASN][1000 genomes] |
| rs6486390 | 0.86[ASN][1000 genomes] |
| rs7128599 | 0.86[ASN][1000 genomes] |
| rs73420003 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73420005 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7478812 | 0.86[ASN][1000 genomes] |
| rs7481960 | 0.84[ASN][1000 genomes] |
| rs7937727 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040065 | chr11:17556031-17753467 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044126 | chr11:17557715-17730646 | Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv540953 | chr11:17557715-17730646 | Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:17699200-17704000 | Weak transcription | HSMM | muscle |
