Variant report

Variant	rs7481960
Chromosome Location	chr11:17671929-17671930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10766416	0.86[ASN][1000 genomes]
rs10832842	0.86[ASN][1000 genomes]
rs12575678	0.88[ASN][1000 genomes]
rs12577406	0.94[ASN][1000 genomes]
rs16934638	0.86[ASN][1000 genomes]
rs17558336	0.94[ASN][1000 genomes]
rs2878806	0.85[CHB][hapmap]
rs3858493	0.86[ASN][1000 genomes]
rs3858494	0.86[ASN][1000 genomes]
rs3858495	0.86[ASN][1000 genomes]
rs3858496	0.86[ASN][1000 genomes]
rs3858498	0.86[ASN][1000 genomes]
rs3901370	0.85[CHB][hapmap]
rs3903112	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3928366	0.86[ASN][1000 genomes]
rs4141262	0.81[ASN][1000 genomes]
rs4757568	0.85[CHB][hapmap]
rs4757569	0.85[CHB][hapmap]
rs67265917	0.84[ASN][1000 genomes]
rs73420003	0.85[ASN][1000 genomes]
rs73420005	0.88[ASN][1000 genomes]
rs7937727	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv897024	chr11:17617468-17692011	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17669000-17672400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr11:17670200-17675000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:17670400-17675600	Enhancers	Fetal Muscle Leg	muscle
4	chr11:17670800-17675600	Enhancers	HSMMtube	muscle
5	chr11:17671000-17672000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:17671000-17672600	Enhancers	HUVEC	blood vessel
7	chr11:17671200-17672400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:17671200-17672400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr11:17671200-17672400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr11:17671400-17672200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:17671400-17672400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr11:17671400-17672600	Bivalent Enhancer	HepG2	liver
13	chr11:17671600-17672000	Enhancers	Psoas Muscle	Psoas
14	chr11:17671600-17672200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:17671600-17672200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:17671600-17672400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:17671600-17672400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr11:17671600-17672400	Flanking Active TSS	Hela-S3	cervix
19	chr11:17671600-17672400	Flanking Active TSS	HSMM	muscle
20	chr11:17671600-17672600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:17671600-17673000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr11:17671600-17673600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:17671800-17672000	Flanking Active TSS	Osteobl	bone
24	chr11:17671800-17672200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr11:17671800-17672200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr11:17671800-17672400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:17671800-17672400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:17671800-17672400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:17671800-17672400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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